Jatropha Genome Database

JcCA0143221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143221.10 - phase: 0 /partial
         (254 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009860001 assembled CDS                                       211   3e-55
GSVIVT01018802001 assembled CDS                                       176   8e-45
GSVIVT01010967001 assembled CDS                                        55   3e-08

>GSVIVT01009860001 assembled CDS
          Length = 170

 Score =  211 bits (537), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/145 (71%), Positives = 118/145 (81%), Gaps = 3/145 (2%)

Query: 1   VRLFLSEESPSQVG---LGAQDHLQAKASWLSHPAGIAADDILPPGFEGGQPANQLHIKL 57
           VRLFLSE+SPSQVG   LGAQDHLQAK SWL H  G+ +DD LPPGFEG  PANQL  KL
Sbjct: 21  VRLFLSEDSPSQVGQVGLGAQDHLQAKTSWLLHSNGMGSDDNLPPGFEGAHPANQLKNKL 80

Query: 58  SDIPVIKWKCPPRFVLDLTWQVVAGEESKEVEVHNQREMRVLEAVYPRPSAIPPNPAFSA 117
           S IP+I W+CPP+FVL+ TWQVVAGEES EVEV  QREMRVLEAVYPRPSAIPPNP+ S 
Sbjct: 81  SQIPLITWRCPPKFVLNFTWQVVAGEESNEVEVQKQREMRVLEAVYPRPSAIPPNPSVSI 140

Query: 118 ELEDLRLNDHQVPLIPITPIEDEDA 142
           + ED+  +D ++ LIPI P+EDE+A
Sbjct: 141 DGEDMDNDDQKILLIPIVPVEDEEA 165


>GSVIVT01018802001 assembled CDS
          Length = 449

 Score =  176 bits (447), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 108/255 (42%), Positives = 147/255 (57%), Gaps = 12/255 (4%)

Query: 2   RLFLSEESPSQVGLGAQDHLQAKASWLSHPAGIAADDILPPGFEGGQPANQLHIKLSDIP 61
           +LF S++ PSQV L A+D L AK SW+ H  G   +  LP GF+  +  NQ   K+S IP
Sbjct: 22  KLFRSKDCPSQVCLKARDGLLAKKSWILHSDGRDTNG-LPHGFKDTR-VNQSKKKVSHIP 79

Query: 62  VIKWKCPPRFVLDLTWQVVAGEESKEVEVHNQREMRVLEAVYPRPSAIPPNPAFSAELED 121
            IKWKCPP+FVL   W V +GEES+E E    RE  V+EAVYPR SAIP +P+ S ++E+
Sbjct: 80  KIKWKCPPKFVLSSNWLVASGEESQEAEAQKLRENHVVEAVYPRISAIPLSPSISLDIEE 139

Query: 122 LRLNDHQVPLIPITPIEDEDAVDAPSEFRGPYNAPVSSQSQLLASGILPPQYSIPAISNT 181
              +D  +PL+PIT +EDE  VD   +   P N+ + S+   L+  +L    +  +  N 
Sbjct: 140 CHQDDCDIPLVPITSMEDEGTVDTLFDLAAPINSSMISKPPALSQDLLASGNT--SQCNR 197

Query: 182 PVNEKPA-AGALLGVEPDV----IXXXXXXXXXINKSNDQGSLIDRDLLVKILNNPRLIK 236
           PV E PA     LG+ PDV    I         + +  +QGSLID DLL+KIL NP++ +
Sbjct: 198 PVLEPPAIEKTALGLSPDVEADIIAAATAAITMVMRCKEQGSLIDTDLLIKILTNPKMTE 257

Query: 237 KLAQDY---GAASNV 248
           KL  D    G  S +
Sbjct: 258 KLINDCREPGGTSTI 272


>GSVIVT01010967001 assembled CDS
          Length = 1084

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 63  IKWKCPPRFVLDLTWQVVAGEESKEVEVHNQREMRVLEAVYPRPSAIPPNPAFSAELEDL 122
           I W+ PP    +  W+V  GE SKEVEV   R  R  E VY     IPPNP    +LE  
Sbjct: 539 IPWQAPPEIRFNPAWRVGTGESSKEVEVQKNRIRREKETVYEALQDIPPNPKEPWDLE-- 596

Query: 123 RLNDHQVPLIPITPIEDEDAVDAPSE 148
              D+   L P+ PIE     D+ +E
Sbjct: 597 --MDYDDSLTPVIPIEQPPDADSAAE 620