Jatropha Genome Database

JcCA0143091.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143091.30 + phase: 0 
         (191 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008565001 assembled CDS                                       175   1e-44

>GSVIVT01008565001 assembled CDS
          Length = 174

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 128/194 (65%), Gaps = 23/194 (11%)

Query: 1   MEDTVMSSITLPKTTQELALEGQKHLEETIQAAYQILSSMNDELCNPNLWXXXXXXXXXX 60
           MED VM      K TQELALEGQKHLEETI++A+QILSSMNDELCNP LW          
Sbjct: 1   MEDKVM------KATQELALEGQKHLEETIESAFQILSSMNDELCNPTLWSTPPPPATAA 54

Query: 61  XXXXXXXPITAATNGDVXXXXXXXXXXXXXXXXXXXTCNGALDEARFRYKNSVAALREVL 120
                    +A+ NGD                       GALD+AR RYK+SVA+LR VL
Sbjct: 55  SSHS-----SASLNGDASSDFSHHMEI---------AGGGALDDARLRYKSSVASLRAVL 100

Query: 121 AAIPNSQKAKAFETTNSSASPA---DHAEVEKLEEQASNLRKELVNKNACLKLLIDQLRD 177
            AI +SQKAKAFE +++++  A   D AE+EKLEE+ASNLRKEL +KN  LKLLIDQLRD
Sbjct: 101 NAIQSSQKAKAFEASSAASGSASQADQAEIEKLEERASNLRKELADKNKYLKLLIDQLRD 160

Query: 178 LITDISTWQSPCSV 191
           LITDISTWQSPCSV
Sbjct: 161 LITDISTWQSPCSV 174