Jatropha Genome Database

JcCA0143091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143091.10 - phase: 0 
         (228 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008566001 assembled CDS                                       289   7e-79

>GSVIVT01008566001 assembled CDS
          Length = 226

 Score =  289 bits (739), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 138/167 (82%), Positives = 151/167 (90%)

Query: 62  SLAIPSPNSLSSPVIPTTPFSQSKNLILGPEDGKIRPCPSTNPSCVSTNPKSSSFAFPLT 121
           SLA+PS NS SS + PTTPFSQSKNL +G E+GKIRPCPS NP CVSTNPKSSSFAFPLT
Sbjct: 60  SLALPSINSQSSLLPPTTPFSQSKNLQVGLENGKIRPCPSINPGCVSTNPKSSSFAFPLT 119

Query: 122 IPDDSTDNAIQKLQEAILKTQRNAKIQVIEDAPNGTYLQAEVDGGFGRDVLEFLVKGDVV 181
           IP+  +DNA+QKLQE ILKTQRNAKIQV+ED P+G YL+AEVDGGFGRD++EFLVKGDVV
Sbjct: 120 IPEKYSDNAVQKLQETILKTQRNAKIQVVEDTPDGQYLRAEVDGGFGRDIMEFLVKGDVV 179

Query: 182 AYRCMATKVTYVYPFTTALGDSKGQEERMKKIIEQLGWYAPSFDSMD 228
           AYR MATKVTYVYPFTTALGDSKGQEERMKKII+ LGWYAPS DSMD
Sbjct: 180 AYRTMATKVTYVYPFTTALGDSKGQEERMKKIIDLLGWYAPSLDSMD 226