Jatropha Genome Database

JcCA0142891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142891.20 - phase: 0 /pseudo/partial
         (70 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008034001 assembled CDS                                        89   6e-19
GSVIVT01020027001 assembled CDS                                        82   5e-17
GSVIVT01011380001 assembled CDS                                        78   7e-16
GSVIVT01008030001 assembled CDS                                        51   1e-07

>GSVIVT01008034001 assembled CDS
          Length = 91

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/50 (88%), Positives = 49/50 (98%)

Query: 21 QVSAAKVLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 70
          +VSAAKVLQETCNYIR+L+REVDDLSERLSELLATTD+AQAAIIR+LL Q
Sbjct: 42 KVSAAKVLQETCNYIRSLNREVDDLSERLSELLATTDSAQAAIIRSLLTQ 91


>GSVIVT01020027001 assembled CDS
          Length = 92

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 47/51 (92%), Gaps = 2/51 (3%)

Query: 21 QVSAAKVLQETCNYIRNLHREVDDLSERLSELLATTDT--AQAAIIRNLLM 69
          +VSA+KVLQETCNYIRNLHREVDDLS+RLS LLA+TDT   QAAIIR+LLM
Sbjct: 42 KVSASKVLQETCNYIRNLHREVDDLSDRLSALLASTDTDSDQAAIIRSLLM 92


>GSVIVT01011380001 assembled CDS
          Length = 90

 Score = 78.2 bits (191), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 46/51 (90%), Gaps = 2/51 (3%)

Query: 21 QVSAAKVLQETCNYIRNLHREVDDLSERLSELLAT--TDTAQAAIIRNLLM 69
          +VSA+KVLQETCNYIR+LHREVDDLSERLS LLAT   D+ +AAIIR+L+M
Sbjct: 40 KVSASKVLQETCNYIRSLHREVDDLSERLSRLLATVDADSPEAAIIRSLIM 90


>GSVIVT01008030001 assembled CDS
          Length = 90

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 30/36 (83%)

Query: 22 VSAAKVLQETCNYIRNLHREVDDLSERLSELLATTD 57
           SA ++L+ETC+YI+ LHREV DLSERLS+LL + D
Sbjct: 39 ASAWRILKETCSYIKRLHREVGDLSERLSQLLDSLD 74