Jatropha Genome Database

JcCA0142871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142871.10 - phase: 0 /pseudo/partial
         (201 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015435001 assembled CDS                                       207   3e-54

>GSVIVT01015435001 assembled CDS
          Length = 983

 Score =  207 bits (527), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 95/121 (78%), Positives = 110/121 (90%)

Query: 1   MFDESKFDVQLKLWALRIPREHCKVATRLLNGYLLDKARVKPITEDPTCEKNRFMILSER 60
           + DESKFD+QLKLWALRIP + CKVA+R+LNGYLLDK RVKPITEDPTCE NR++ILSER
Sbjct: 2   LLDESKFDLQLKLWALRIPSQLCKVASRILNGYLLDKPRVKPITEDPTCETNRYIILSER 61

Query: 61  VQNTDLTDIPVEKLDELKKLCEIEVVPYSMTLGYSYWSADHILKQILPPGVEIPSSFETI 120
           ++N DL+DIP +K DELK LC+IEVVPYS+TLGYSYWSADH+LKQILP GVE+PSSFETI
Sbjct: 62  IKNPDLSDIPEDKRDELKVLCKIEVVPYSLTLGYSYWSADHVLKQILPDGVEVPSSFETI 121

Query: 121 V 121
            
Sbjct: 122 T 122