Jatropha Genome Database

JcCA0142841.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142841.20 + phase: 0 /pseudo/partial
         (366 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022250001 assembled CDS                                       390   e-109

>GSVIVT01022250001 assembled CDS
          Length = 1032

 Score =  390 bits (1002), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/249 (77%), Positives = 206/249 (82%), Gaps = 1/249 (0%)

Query: 118 ILKEYLEILLECAYCRTIETVEGGGXXXXXXXXXXXXXXXYTMVMDVHDRFRTESHSEAA 177
           +L+++ E L      RTIETVEGGG               YTMVMDVH+RFRTESHSEAA
Sbjct: 121 VLQDF-EALTPNLLARTIETVEGGGLIVLLLRSLSSLTSLYTMVMDVHERFRTESHSEAA 179

Query: 178 GRFNERFLLSLASCKACVVMDDELNILPISSHMRSITPVPVKEDSEGLSEAERDLKNLKE 237
           GRFNERFLLSLASCKACV+MDDELNILPISSH+RSIT VPVKEDSEGLSEAERDLKNLKE
Sbjct: 180 GRFNERFLLSLASCKACVIMDDELNILPISSHIRSITAVPVKEDSEGLSEAERDLKNLKE 239

Query: 238 QLHDDFPVGPLIKRCCTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSXXXXXXXXX 297
           QL++DFPVGPLIK+CCTLDQGKAVITFLDAILDK LRSTV  LAARGRGKS         
Sbjct: 240 QLNEDFPVGPLIKKCCTLDQGKAVITFLDAILDKALRSTVVSLAARGRGKSAALGLAVAG 299

Query: 298 XXXXXYSNIFVTAPSPENLKTLFEFICKGFDVLEYKEHIDYDVVKSVNPEFKKATVRINV 357
                YSNIFVTAPSP+NLKTLFEFICKGFD LEYKEHIDYDVVKS NPEFKKATVRIN+
Sbjct: 300 AIAAGYSNIFVTAPSPDNLKTLFEFICKGFDALEYKEHIDYDVVKSTNPEFKKATVRINI 359

Query: 358 YKQHRQTIQ 366
           Y+QHRQTIQ
Sbjct: 360 YRQHRQTIQ 368



 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 38/43 (88%)

Query: 1  MRKKVDERIRTLIENGVKLRHRSMFVIIGDKSRDQARHFHKIM 43
          MRKKVDERIRTLIENGVK RHRSMFVIIGDKSRDQ  + H ++
Sbjct: 1  MRKKVDERIRTLIENGVKTRHRSMFVIIGDKSRDQIVNLHYML 43