Jatropha Genome Database

JcCA0142191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142191.20 - phase: 0 /pseudo/partial
         (109 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038223001 assembled CDS                                        75   7e-15
GSVIVT01038224001 assembled CDS                                        72   5e-14
GSVIVT01038225001 assembled CDS                                        68   7e-13
GSVIVT01038226001 assembled CDS                                        67   2e-12
GSVIVT01038235001 assembled CDS                                        66   3e-12
GSVIVT01038236001 assembled CDS                                        66   4e-12
GSVIVT01015527001 assembled CDS                                        57   2e-09
GSVIVT01004005001 assembled CDS                                        55   6e-09
GSVIVT01029270001 assembled CDS                                        51   1e-07

>GSVIVT01038223001 assembled CDS
          Length = 342

 Score = 75.1 bits (183), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/52 (65%), Positives = 42/52 (80%)

Query: 58  PKYHEMIIPKIKEGKIVYVEDIADGIESGPAAVVGVFRGCNMGKQVVKVADE 109
           PKY EM++P IKEGKIVYVED  +G+ES P A++G+F G N+GKQVV VA E
Sbjct: 291 PKYLEMVLPHIKEGKIVYVEDTVEGLESAPQALIGLFSGRNVGKQVVVVARE 342


>GSVIVT01038224001 assembled CDS
          Length = 342

 Score = 72.0 bits (175), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 42/52 (80%)

Query: 58  PKYHEMIIPKIKEGKIVYVEDIADGIESGPAAVVGVFRGCNMGKQVVKVADE 109
           PKY EM++P IKEGKIVYVED  +G+E+ P A++G+F G N+GKQVV V+ E
Sbjct: 291 PKYMEMVLPHIKEGKIVYVEDTVEGLENAPQALIGLFSGANVGKQVVVVSRE 342


>GSVIVT01038225001 assembled CDS
          Length = 365

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 43/52 (82%)

Query: 58  PKYHEMIIPKIKEGKIVYVEDIADGIESGPAAVVGVFRGCNMGKQVVKVADE 109
           PK+ E I+P IKEGK+ YVED+A+G+++ P A++G+F G N+GKQV++VA E
Sbjct: 314 PKFLETILPHIKEGKVAYVEDVAEGLQNAPPALIGLFSGHNVGKQVIQVAME 365


>GSVIVT01038226001 assembled CDS
          Length = 312

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 44/56 (78%), Gaps = 4/56 (7%)

Query: 54  SFEKPKYHEMIIPKIKEGKIVYVEDIADGIESGPAAVVGVFRGCNMGKQVVKVADE 109
           + +KP    MI+P +KEGK+VYVEDIA+G+ES P A++G+F G N+GKQVV VA E
Sbjct: 261 NLDKP----MILPHVKEGKVVYVEDIAEGLESAPQALIGLFSGRNVGKQVVLVARE 312


>GSVIVT01038235001 assembled CDS
          Length = 279

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 41/52 (78%)

Query: 58  PKYHEMIIPKIKEGKIVYVEDIADGIESGPAAVVGVFRGCNMGKQVVKVADE 109
           P+  + ++P I+EGK+VYVEDIA+G+E  PAA+VG+F G N+GKQV  VA E
Sbjct: 228 PQMLDTLLPYIREGKLVYVEDIAEGLERSPAALVGLFSGHNVGKQVAAVAHE 279


>GSVIVT01038236001 assembled CDS
          Length = 342

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 42/52 (80%)

Query: 58  PKYHEMIIPKIKEGKIVYVEDIADGIESGPAAVVGVFRGCNMGKQVVKVADE 109
           PK+ +MI+P I+EGKIVY E+I +G+ESGPAA++ +  G N+GKQVV VA E
Sbjct: 291 PKFLDMILPHIREGKIVYFEEINEGLESGPAALIKLLSGRNVGKQVVVVARE 342


>GSVIVT01015527001 assembled CDS
          Length = 346

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 35/42 (83%)

Query: 68  IKEGKIVYVEDIADGIESGPAAVVGVFRGCNMGKQVVKVADE 109
           + +GKI  +EDI+ G+ES P+A VG+FRG N+GK++VK+ADE
Sbjct: 305 LNDGKIQVIEDISQGVESIPSAFVGLFRGDNVGKKIVKIADE 346


>GSVIVT01004005001 assembled CDS
          Length = 346

 Score = 55.1 bits (131), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 58  PKYHEMIIPKIKEGKIVYVEDIADGIESGPAAVVGVFRGCNMGKQVVKVADE 109
           P++ E +    K+GKIVY+ED+   +ES PAA VG+F G N+GKQV+ VA E
Sbjct: 295 PRFVEDVSCYYKQGKIVYIEDMNQALESAPAAFVGLFSGKNVGKQVICVAPE 346


>GSVIVT01029270001 assembled CDS
          Length = 347

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 32/38 (84%)

Query: 72  KIVYVEDIADGIESGPAAVVGVFRGCNMGKQVVKVADE 109
           KI  +EDI+ G+ES P+A VG+FRG N+GK+VVKVADE
Sbjct: 310 KIHVLEDISQGVESIPSAFVGLFRGDNVGKKVVKVADE 347