Jatropha Genome Database

JcCA0142031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142031.20 + phase: 0 
         (169 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018349001 assembled CDS                                       112   8e-26
GSVIVT01026900001 assembled CDS                                       106   5e-24

>GSVIVT01018349001 assembled CDS
          Length = 114

 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 80/121 (66%), Gaps = 7/121 (5%)

Query: 49  MAKKILEYRSTFPNQLEVTLASVLSAQRPFLPSMDSGSDLGPAGEFNPGLEEQVNSSKPT 108
           MA+K+  YR+T P+QL+ T  S+LS+QRP      SGS+   +GE NPG    +      
Sbjct: 1   MAQKVRHYRTTLPDQLKATFTSILSSQRPPFLEFVSGSEPEASGEPNPGQSRVL------ 54

Query: 109 SLTEGDQKITEKVRLLKDKISSNVSAMPTVLNRMKECMSKIDNLDSHVGTLHPFSKKKKT 168
            L +GD + +EK++LLK KISSNVS +P +L R+ ECMS +D LDS+ G +HP  K+++T
Sbjct: 55  -LAQGDHETSEKIQLLKQKISSNVSTIPVLLKRLNECMSMVDKLDSYNGIMHPAFKRRRT 113

Query: 169 S 169
           S
Sbjct: 114 S 114


>GSVIVT01026900001 assembled CDS
          Length = 114

 Score =  106 bits (264), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 7/121 (5%)

Query: 49  MAKKILEYRSTFPNQLEVTLASVLSAQRPFLPSMDSGSDLGPAGEFNPGLEEQVNSSKPT 108
           MA+K+  YR+T P+QL+ T  S+LS+QRP      SGS+   +GE NPG    +      
Sbjct: 1   MAQKVRHYRTTLPDQLKATFTSILSSQRPPFLEFVSGSEPEASGEPNPGQSRVL------ 54

Query: 109 SLTEGDQKITEKVRLLKDKISSNVSAMPTVLNRMKECMSKIDNLDSHVGTLHPFSKKKKT 168
            L +GD + +EK++LLK  ISSNVS +  +L R+ ECMS +D LDS+ G +HP  K+++T
Sbjct: 55  -LAQGDHETSEKIQLLKQNISSNVSTILVLLKRLNECMSMVDKLDSYNGIMHPAFKRRRT 113

Query: 169 S 169
           S
Sbjct: 114 S 114