Jatropha Genome Database
- JcCA0142031.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0142031.10 - phase: 0 /pseudo/partial
(126 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01026899001 assembled CDS 128 9e-31
GSVIVT01026898001 assembled CDS 125 6e-30
GSVIVT01021301001 assembled CDS 60 2e-10
GSVIVT01038213001 assembled CDS 60 3e-10
GSVIVT01008475001 assembled CDS 59 5e-10
GSVIVT01015593001 assembled CDS 59 6e-10
GSVIVT01030667001 assembled CDS 54 2e-08
GSVIVT01037093001 assembled CDS 54 2e-08
GSVIVT01003214001 assembled CDS 48 1e-06
GSVIVT01015479001 assembled CDS 46 4e-06
>GSVIVT01026899001 assembled CDS
Length = 304
Score = 128 bits (321), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 72/104 (69%), Gaps = 26/104 (25%)
Query: 1 MQELEKGVEPNLADYDKRTALHLASCEGCNEIVVLLLEKGADVNSVDRWGRTVFPICLAA 60
+QELEKGVE NLADYDKRTALHLA+CEGC EIVVLLLEKGAD N +DRWGRT
Sbjct: 22 IQELEKGVEANLADYDKRTALHLAACEGCEEIVVLLLEKGADANPIDRWGRT-------- 73
Query: 61 LVLFAYSRHFIGFSFFPHPLSDARSFGHEDICKILESRGGIDPI 104
PLSDA SFGHE IC+ILE++GGIDP+
Sbjct: 74 ------------------PLSDAHSFGHEKICEILEAQGGIDPV 99
>GSVIVT01026898001 assembled CDS
Length = 583
Score = 125 bits (313), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 70/99 (70%), Gaps = 26/99 (26%)
Query: 1 MQELEKGVEPNLADYDKRTALHLASCEGCNEIVVLLLEKGADVNSVDRWGRTVFPICLAA 60
+QELEKGV+ NLADYDKRTALHLA+CEGC EIVVLLLEKGADVNS+DRWGRT
Sbjct: 200 IQELEKGVDANLADYDKRTALHLAACEGCEEIVVLLLEKGADVNSIDRWGRT-------- 251
Query: 61 LVLFAYSRHFIGFSFFPHPLSDARSFGHEDICKILESRG 99
PLSDARSFGHE ICKILE++G
Sbjct: 252 ------------------PLSDARSFGHEKICKILEAQG 272
>GSVIVT01021301001 assembled CDS
Length = 462
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 26/97 (26%)
Query: 4 LEKGVEPNLADYDKRTALHLASCEGCNEIVVLLLEKGADVNSVDRWGRTVFPICLAALVL 63
L+ G++ N D D RTALH+A+C+G +++V LL+ GA+++ DRWG T
Sbjct: 62 LDSGMDVNFRDIDNRTALHVAACQGFSDVVEFLLKNGAEIDLEDRWGST----------- 110
Query: 64 FAYSRHFIGFSFFPHPLSDARSFGHEDICKILESRGG 100
PL+DA + + D+ K+LE G
Sbjct: 111 ---------------PLADAIHYKNHDVIKLLEKHGA 132
>GSVIVT01038213001 assembled CDS
Length = 400
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 26/100 (26%)
Query: 4 LEKGVEPNLADYDKRTALHLASCEGCNEIVVLLLEKGADVNSVDRWGRTVFPICLAALVL 63
L +G + N D D RTALH+A+CEG E+V LLL + A++++ DRWG T
Sbjct: 19 LNEGTDVNSIDLDGRTALHIAACEGQIEVVKLLLSRKANIDARDRWGSTA---------- 68
Query: 64 FAYSRHFIGFSFFPHPLSDARSFGHEDICKILESRGGIDP 103
+DA+ +G+ +I IL++RG P
Sbjct: 69 ----------------AADAKYYGNVEIYNILKARGAKTP 92
>GSVIVT01008475001 assembled CDS
Length = 750
Score = 58.9 bits (141), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 26/93 (27%)
Query: 4 LEKGVEPNLADYDKRTALHLASCEGCNEIVVLLLEKGADVNSVDRWGRTVFPICLAALVL 63
L G+ PN +YD RT LHLA+ EG + LLLE GA V + DRWG T
Sbjct: 585 LANGINPNAKNYDSRTPLHLAASEGLYSMTNLLLEAGASVLAKDRWGNT----------- 633
Query: 64 FAYSRHFIGFSFFPHPLSDARSFGHEDICKILE 96
PL +AR G++++ K+LE
Sbjct: 634 ---------------PLDEARIGGNKNLIKLLE 651
>GSVIVT01015593001 assembled CDS
Length = 836
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 26/93 (27%)
Query: 4 LEKGVEPNLADYDKRTALHLASCEGCNEIVVLLLEKGADVNSVDRWGRTVFPICLAALVL 63
L G+ PN +YD RT LHLA+ EG + LLLE GA V + DRWG T
Sbjct: 671 LANGINPNAKNYDSRTPLHLAASEGLYSMTNLLLEAGASVLAKDRWGNT----------- 719
Query: 64 FAYSRHFIGFSFFPHPLSDARSFGHEDICKILE 96
PL +AR G++++ K+LE
Sbjct: 720 ---------------PLDEARIGGNKNLIKLLE 737
>GSVIVT01030667001 assembled CDS
Length = 794
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 26/102 (25%)
Query: 4 LEKGVEPNLADYDKRTALHLASCEGCNEIVVLLLEKGADVNSVDRWGRTVFPICLAALVL 63
+ G +PN DYD R+ LHLAS G +IV L+++G DVN D +G T
Sbjct: 531 IRAGADPNKTDYDGRSPLHLASARGFEDIVTFLIQEGVDVNISDNFGNT----------- 579
Query: 64 FAYSRHFIGFSFFPHPLSDARSFGHEDICKILESRGGIDPID 105
PL +A H+ + +L ++G + ID
Sbjct: 580 ---------------PLLEAIKNAHDRVASLLVNKGALLKID 606
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%)
Query: 4 LEKGVEPNLADYDKRTALHLASCEGCNEIVVLLLEKGADVNSVDRWGRT 52
L G++PN DYD RT LH+A+ EG + LLLE A V S DRWG T
Sbjct: 628 LSNGIDPNSKDYDHRTPLHVAASEGLYFMAKLLLEARASVFSKDRWGNT 676
>GSVIVT01037093001 assembled CDS
Length = 737
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 26/94 (27%)
Query: 4 LEKGVEPNLADYDKRTALHLASCEGCNEIVVLLLEKGADVNSVDRWGRTVFPICLAALVL 63
LE GV+PN +YD RT LH A+ EG + + +L++ GADV S DR+ RT
Sbjct: 655 LENGVDPNSRNYDLRTPLHFAAAEGLHLVANILIKFGADVLSKDRYRRT----------- 703
Query: 64 FAYSRHFIGFSFFPHPLSDARSFGHEDICKILES 97
PL + R+ G + + KILE
Sbjct: 704 ---------------PLDEGRACGSKPLIKILEQ 722
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 4 LEKGVEPNLADYDKRTALHLASCEGCNEIVVLLLEKGADVNSVDRWGRT 52
++ G +P DYD R ALHLA+ +G EIV L++ GA+ N +D +G +
Sbjct: 558 IKSGADPCKTDYDGRCALHLAAAKGYEEIVRFLIQHGANTNCIDNFGNS 606
>GSVIVT01003214001 assembled CDS
Length = 435
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 26/88 (29%)
Query: 14 DYDKRTALHLASCEGCNEIVVLLLEKGADVNSVDRWGRTVFPICLAALVLFAYSRHFIGF 73
DYD RT LH+AS G ++ L+E GADVN+ DRW T
Sbjct: 65 DYDSRTPLHVASLHGWIDVAKCLIEFGADVNAQDRWKNT--------------------- 103
Query: 74 SFFPHPLSDARSFGHEDICKILESRGGI 101
PL+DA + ++L+S GG+
Sbjct: 104 -----PLADAEGAKKHSMIELLKSYGGL 126
>GSVIVT01015479001 assembled CDS
Length = 872
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 26/99 (26%)
Query: 2 QELEKGVEPNLADYDKRTALHLASCEGCNEIVVLLLEKGADVNSVDRWGRTVFPICLAAL 61
Q L++G++PN +D + RTALH+A+ +G V+LLL+ GA N+ D G
Sbjct: 544 QLLKRGLDPNESDSNGRTALHIAASKGSESCVLLLLDYGAGPNNRDSEGVV--------- 594
Query: 62 VLFAYSRHFIGFSFFPHPLSDARSFGHEDICKILESRGG 100
PL +A GHE + ++L G
Sbjct: 595 -----------------PLWEAMVGGHESVIQLLVDNGA 616