Jatropha Genome Database

JcCA0141541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141541.10 - phase: 0 
         (392 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035954001 assembled CDS                                       605   e-173
GSVIVT01035993001 assembled CDS                                       448   e-126
GSVIVT01028650001 assembled CDS                                        97   1e-20
GSVIVT01012834001 assembled CDS                                        69   4e-12

>GSVIVT01035954001 assembled CDS
          Length = 396

 Score =  605 bits (1559), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 302/396 (76%), Positives = 324/396 (81%), Gaps = 4/396 (1%)

Query: 1   MSWRYKAGLFLISAVVIIWVTSAEVTQGIFTDYKQPFAVTYLGASLMVVYLPIAFLKDWI 60
           MSW+Y+AGLFLI+AVV+IWVTSAEVTQGIF DYKQPFAVTYLGASLMVVYLPIAF+KDW+
Sbjct: 1   MSWKYRAGLFLIAAVVVIWVTSAEVTQGIFIDYKQPFAVTYLGASLMVVYLPIAFIKDWL 60

Query: 61  CKMIXXXXXXXXXXXXXLNESSDGLNSPLS----RKIFEMELQGTLSKKGSEADLSSQAE 116
           C  +             LNESS GLNSPL     +K FE+E  GTL +K SE D S+  E
Sbjct: 61  CNSLKRRSSKSGKNAETLNESSAGLNSPLKHIGGQKTFELEHLGTLPRKDSETDYSAYEE 120

Query: 117 AKPLVPRXXXXXXXXXXXXELTAREIATYGFYIAPIWFVTEYLSNAALARXXXXXXXXXX 176
            +PLV +             LT R+IA YGFYIAPIWF+TEY SNAALAR          
Sbjct: 121 GRPLVSKRRDDTDLLKQEKALTTRQIAIYGFYIAPIWFITEYFSNAALARTSVASTTVLS 180

Query: 177 XXXXXXXXXIGVFLGQDTLNAAKVVAVFVSMAGVAMTTLGKTWAADDSQLSASINGKRSL 236
                    IG  LGQD+LN AKVVAVFVSMAGVAMTT+GKTWA D+S+LSAS+NGKRSL
Sbjct: 181 STSGLFTLFIGALLGQDSLNVAKVVAVFVSMAGVAMTTMGKTWATDESKLSASLNGKRSL 240

Query: 237 VGDLFGLLSAMSYGLFTVLLKKFAGEEGERVDVQKLFGYIGLFTLVALWWLVWPLTALGI 296
           VGDLFGLLSAMSYGLFTVLLKKFAGEEGERVDVQKLFGYIGLFTLVALWWLVWPLTALGI
Sbjct: 241 VGDLFGLLSAMSYGLFTVLLKKFAGEEGERVDVQKLFGYIGLFTLVALWWLVWPLTALGI 300

Query: 297 EPKFTIPHSAKVDEVVIANGFIGSVLSDYFWALCVVWTTPLVATLGMSLTIPLAMVADMM 356
           EPKFTIPHSAK+DEVVIANGF+GSVLSDYFWALCVVWTTPLVATLGMSLTIPLAMVADMM
Sbjct: 301 EPKFTIPHSAKMDEVVIANGFVGSVLSDYFWALCVVWTTPLVATLGMSLTIPLAMVADMM 360

Query: 357 IHGRHYSAIYILGSAQVFAGFVIANLSDWFSKKLGL 392
           IHGRHYSAIYILGSAQVFAGFVIANLSDWFSKKLGL
Sbjct: 361 IHGRHYSAIYILGSAQVFAGFVIANLSDWFSKKLGL 396


>GSVIVT01035993001 assembled CDS
          Length = 396

 Score =  448 bits (1153), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/390 (59%), Positives = 272/390 (69%), Gaps = 2/390 (0%)

Query: 1   MSWRYKAGLFLISAVVIIWVTSAEVTQGIFTDYKQPFAVTYLGASLMVVYLPIAFLKDWI 60
           M W+YKAGL LI  VV IWV SAE+TQ IF++YKQPFA+TYLG SLMVVYLPIA LKDWI
Sbjct: 1   MGWKYKAGLGLIGTVVFIWVASAEITQRIFSEYKQPFALTYLGVSLMVVYLPIAVLKDWI 60

Query: 61  CKMIXXXXXXXXXXXXXLNESSDGLNSPLS-RKIFEMELQGTLSKKGSEADLSSQAEAKP 119
           C  +             + +SS GL  PL   +I       T S   ++ DLS   +   
Sbjct: 61  CSRLDINSFKNLCNGSTIAKSSAGLAIPLRINEICPSSETDTESSLNTDMDLSENEDGWL 120

Query: 120 LVPRXXXXXXXXXXXXELTAREIATYGFYIAPIWFVTEYLSNAALARXXXXXXXXXXXXX 179
           ++              EL++ EIA  GFY+APIWF+TEY SN+ALA              
Sbjct: 121 IITNMEDEVGLLEKNHELSSWEIAKCGFYLAPIWFITEYSSNSALANTSVASTTVLTSTS 180

Query: 180 XXXXXXIGVFLGQDTLNAAKVVAVFVSMAGVAMTTLGKTWAADDSQLSASINGKRSLVGD 239
                  G  LGQDT+N  KVVAVF+SMAGVAMTT+GKTWA D+  LSAS + K S++GD
Sbjct: 181 GLFTLFFGALLGQDTVNITKVVAVFISMAGVAMTTVGKTWAPDE-MLSASESRKHSIIGD 239

Query: 240 LFGLLSAMSYGLFTVLLKKFAGEEGERVDVQKLFGYIGLFTLVALWWLVWPLTALGIEPK 299
           +FGLLSA+SYGLFTVLLK+ AG EG++ DVQK FGYIGLFTL+  WWL WPL A+GIEP+
Sbjct: 240 IFGLLSAVSYGLFTVLLKRSAGSEGDKADVQKFFGYIGLFTLLGFWWLAWPLNAVGIEPQ 299

Query: 300 FTIPHSAKVDEVVIANGFIGSVLSDYFWALCVVWTTPLVATLGMSLTIPLAMVADMMIHG 359
           F +PHS  + EVV+ NGF+GSVLSDYFWAL VVWTTPLVATLGMSLTIPLAM+ADMMIHG
Sbjct: 300 FKLPHSTSIGEVVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMIADMMIHG 359

Query: 360 RHYSAIYILGSAQVFAGFVIANLSDWFSKK 389
           R YSA+YI G  +VFAGFVIANLSD FS K
Sbjct: 360 RGYSAVYIFGCIEVFAGFVIANLSDKFSPK 389


>GSVIVT01028650001 assembled CDS
          Length = 390

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 174/391 (44%), Gaps = 55/391 (14%)

Query: 3   WRYKAGLFLISAVVIIWVTSAEVTQGIFTDYKQPFAVTYLGASLMVVYLPIA----FLKD 58
           WR+  GL  I AV  IW+ ++ V Q +      PF +TY+  SL V+Y+P+     +L+D
Sbjct: 6   WRWVLGLIYIVAVASIWIAASYVVQSVVDAGVSPFLITYICNSLFVIYIPLVEIGRYLED 65

Query: 59  WICKMIXXXXXXXXXXXXXLNESSDGLNSPLSRKIFEME---LQGTLSKKGSEADLSSQA 115
              K +             L ES   + S L  K+   E   L   + +K  +  L S+ 
Sbjct: 66  SYGKQVVL-----------LGES---IVSELDLKVERFEAASLDQAIVRKDGDEQLDSKG 111

Query: 116 EAKPLVPRXXXXXXXXXXXXELTAREIATYGFYIAPIWFVTEYLSNAALARXXXXXXXXX 175
                                 T   +A     + P WF+ +   N +L           
Sbjct: 112 R--------------------WTRTRVAKASLLVCPFWFLAQLTFNLSLEYTTVTSNTIL 151

Query: 176 XXXXXXXXXXIG-VFLGQDTLNAAKVVAVFVSMAGVAMTTLGKTWAADDSQLSASINGKR 234
                     +  VFLG+      K+++V + M G  + +LG      DS+   S     
Sbjct: 152 SSASSLFTFLVALVFLGEK-FTWVKLISVLLCMGGTIIVSLG------DSETGLSAIATN 204

Query: 235 SLVGDLFGLLSAMSYGLFTVLLKK-FAGEEGE--RVDVQKLFGYIGLFTLVALWWLVWPL 291
            L+GD+F L+SA  Y ++  L++K    ++G+  +V + +  G++GLF L+    +   L
Sbjct: 205 PLLGDIFALVSAALYAVYITLIRKNIPDDDGKSGQVSMAQFLGFLGLFNLLIFLPVALIL 264

Query: 292 TALGIEPKFTIPHSAKVDEVVIANGFIGSVLSDYFWALCVVWTTPLVATLGMSLTIPLAM 351
               +EP +T+  + K   +++  G + +VLSDY WA  ++ T+  VAT G+++ +PLA 
Sbjct: 265 NFTKLEPFYTL--TWKQLGLIVGKGLLDNVLSDYLWAKAILLTSTTVATAGLTIQVPLAA 322

Query: 352 VADMMIHGRHYSAIYILGSAQVFAGFVIANL 382
           V D +  G   + +  +G+A V AGF   N+
Sbjct: 323 VVDSL-TGNAPNFMDYIGAAAVMAGFAGINI 352


>GSVIVT01012834001 assembled CDS
          Length = 92

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/50 (70%), Positives = 41/50 (82%), Gaps = 3/50 (6%)

Query: 236 LVGDLFGLLSAMSYGLFTVLLKKFAGEEGERVDVQKLFGYIGLFTLVALW 285
           L GDLF +LSA++YGLFTVLLKKFAGEEG+RVDVQKLFG    + L + W
Sbjct: 38  LGGDLFSVLSALTYGLFTVLLKKFAGEEGDRVDVQKLFGN---YLLSSFW 84