Jatropha Genome Database

JcCA0141501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141501.10 + phase: 2 /partial
         (103 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013167001 assembled CDS                                       178   5e-46

>GSVIVT01013167001 assembled CDS
          Length = 340

 Score =  178 bits (451), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 83/103 (80%), Positives = 97/103 (94%)

Query: 1   IADVKNKLQEYVDDINENIEKLDTRGPVSKYILPDENLRGSLTLTFEEAMSGVACDLESR 60
           + DV  KLQEYVDDIN +IE+L++RGPVSKY+LPDE+LRGSLT++F+EAMSGVACDL+S 
Sbjct: 204 VIDVMKKLQEYVDDINNHIERLESRGPVSKYVLPDEDLRGSLTISFDEAMSGVACDLKSH 263

Query: 61  GFHVLCKATEKVVGHVKPYSITGSLPLIRELQDEGFDVQTAGY 103
           GFHVL KATE+VVG+VKPYSITGSLPLIRELQDEGFDVQT+GY
Sbjct: 264 GFHVLSKATEEVVGYVKPYSITGSLPLIRELQDEGFDVQTSGY 306