Jatropha Genome Database

JcCA0141381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141381.10 + phase: 1 /partial
         (220 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016731001 assembled CDS                                       436   e-123
GSVIVT01024037001 assembled CDS                                       143   8e-35
GSVIVT01018748001 assembled CDS                                       142   1e-34
GSVIVT01012066001 assembled CDS                                       139   1e-33
GSVIVT01016670001 assembled CDS                                       138   2e-33
GSVIVT01025839001 assembled CDS                                       113   7e-26
GSVIVT01009737001 assembled CDS                                        72   3e-13

>GSVIVT01016731001 assembled CDS
          Length = 246

 Score =  436 bits (1120), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 204/217 (94%), Positives = 214/217 (98%)

Query: 3   MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAAITSIGVRGKDSVCVVTQKKVPDKL 62
           MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKA+ ITSIGVRGKDSVCVVTQKKVPDKL
Sbjct: 1   MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKASGITSIGVRGKDSVCVVTQKKVPDKL 60

Query: 63  LDQTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLAKWIAD 122
           LDQTSVTHLFPITK+LGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLA+WIAD
Sbjct: 61  LDQTSVTHLFPITKFLGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLARWIAD 120

Query: 123 KSQVYTQHAYMRPLGVVAMVLGIDEENGPQLYKCDPAGHFYGHKATSAGLKEQEAINFLE 182
           KSQVYTQHAYMRPLGVVAM+LGID+ENGP+L+KCDPAGHF+GHKATSAGLKEQEAINFLE
Sbjct: 121 KSQVYTQHAYMRPLGVVAMILGIDDENGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLE 180

Query: 183 KKMKNDPAFSYEETVQTAISALQSILQEDFKATEIEV 219
           KKMKNDPAFSY+ETVQTAISALQS+LQEDFK  EIEV
Sbjct: 181 KKMKNDPAFSYDETVQTAISALQSVLQEDFKPNEIEV 217


>GSVIVT01024037001 assembled CDS
          Length = 249

 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 117/211 (55%), Gaps = 5/211 (2%)

Query: 11  YDRHITIFSPEGRLFQVEYAFKAVKAAAITSIGVRGKDSVCVVTQKKVPDKLLDQTSVTH 70
           YDR IT+FSP+G LFQVEYA +AV+     ++GVRG D++ +  +KK   KL D  +V  
Sbjct: 4   YDRAITVFSPDGHLFQVEYALEAVRKGN-AAVGVRGTDTIVLGVEKKSTAKLQDSRTVRK 62

Query: 71  LFPITKYLGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLAKWIADKSQVYTQH 130
           +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ 
Sbjct: 63  IVNLDDHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQS 122

Query: 131 AYMRPLGVVAMVLGIDEENG-PQLYKCDPAGHFYGHKATSAGLKEQEAINFLEKKMKNDP 189
             +RP G+  +++G D   G P LY+ DP+G F   KA + G        FLEK  K   
Sbjct: 123 GGVRPFGLSTLIIGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET- 181

Query: 190 AFSYEETVQTAISALQSILQEDFKATEIEVL 220
             S +ETV+ AI AL  +++   K  EI V+
Sbjct: 182 --SGQETVKLAIRALLEVVESGGKNIEIAVM 210


>GSVIVT01018748001 assembled CDS
          Length = 249

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 117/211 (55%), Gaps = 5/211 (2%)

Query: 11  YDRHITIFSPEGRLFQVEYAFKAVKAAAITSIGVRGKDSVCVVTQKKVPDKLLDQTSVTH 70
           YDR IT+FSP+G LFQVEYA +AV+     ++GVRG D++ +  +KK   KL D  +V  
Sbjct: 4   YDRAITVFSPDGHLFQVEYALEAVRKGN-AAVGVRGTDTIVLGVEKKSTAKLQDSRTVRK 62

Query: 71  LFPITKYLGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLAKWIADKSQVYTQH 130
           +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ 
Sbjct: 63  IVNLDDHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQS 122

Query: 131 AYMRPLGVVAMVLGIDEENG-PQLYKCDPAGHFYGHKATSAGLKEQEAINFLEKKMKNDP 189
             +RP G+  +++G D   G P LY+ DP+G F   KA + G        FLEK  K   
Sbjct: 123 GGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET- 181

Query: 190 AFSYEETVQTAISALQSILQEDFKATEIEVL 220
             S +ETV+ AI AL  +++   K  EI V+
Sbjct: 182 --SGQETVKLAIRALLEVVESGGKNIEIAVM 210


>GSVIVT01012066001 assembled CDS
          Length = 235

 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 121/209 (57%), Gaps = 4/209 (1%)

Query: 11  YDRHITIFSPEGRLFQVEYAFKAVKAAAITSIGVRGKDSVCVVTQKKVPDKLLDQTSVTH 70
           Y   +T FSP G+L Q+E+A  AV +   TS+G++  + V + T+KK+P  L+D+ SV  
Sbjct: 6   YSFSLTTFSPSGKLVQIEHALTAVGSGQ-TSLGIKAANGVVIATEKKLPSILVDEASVQK 64

Query: 71  LFPITKYLGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLAKWIADKSQVYTQH 130
           +  +T  +G++ +GM  D+R LV+++R +A ++   Y   +PV  L +  A   Q +TQ 
Sbjct: 65  IQVLTPNIGVVYSGMGPDSRVLVRKSRKQAEQYHRLYKESIPVTQLVRETAAVMQEFTQS 124

Query: 131 AYMRPLGVVAMVLGIDEENGPQLYKCDPAGHFYGHKATSAGLKEQEAINFLEKKMKNDPA 190
             +RP GV  +V G D +NGPQLY+ DP+G ++  KA++ G     A  FLEK+  +D  
Sbjct: 125 GGVRPFGVSLLVAGFD-DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDD-- 181

Query: 191 FSYEETVQTAISALQSILQEDFKATEIEV 219
              ++ V TAI  L+   +    +  IE+
Sbjct: 182 MELDDAVHTAILTLKEGFEGQISSKNIEI 210


>GSVIVT01016670001 assembled CDS
          Length = 293

 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 122/212 (57%), Gaps = 7/212 (3%)

Query: 11  YDRHITIFSPEGRLFQVEYAFKAVKAAAITSIGVRGKDSVCVVTQKKVPDKLLDQTSVTH 70
           YDR +  FSPEGRLFQVEYA +A+K  + T+IG++ K+ V +  +K++   LL+ +SV  
Sbjct: 64  YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEK 122

Query: 71  LFPITKYLGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLAKWIADKSQVY--- 127
           +  I +++G   +G+ ADARTLV+ AR E    RF YG  M V+   + + D +  +   
Sbjct: 123 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG 182

Query: 128 TQHAYMRPLGVVAMVLGIDEENGPQLYKCDPAGHFYGHKATSAGLKEQEAINFLEKKMKN 187
            + +  RP GV  ++ G D ENGP LY  DP+G F+   A + G   + A + L+++   
Sbjct: 183 DEESMSRPFGVSLLIAGHD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNQ 241

Query: 188 DPAFSYEETVQTAISALQSILQEDFKATEIEV 219
           D      ET+  A+S L+ +++E      +++
Sbjct: 242 DLTLQEAETI--ALSILKQVMEEKVTPNNVDI 271


>GSVIVT01025839001 assembled CDS
          Length = 249

 Score =  113 bits (282), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 101/176 (57%), Gaps = 2/176 (1%)

Query: 8   GGGYDRHITIFSPEGRLFQVEYAFKAVKAAAITSIGVRGKDSVCVVTQKKVPDKLLDQTS 67
           G GYD  +T FSP+GR+FQ+EYA KAV  +  T IG++ KD + +  +K +  K++   S
Sbjct: 5   GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG-TVIGIKCKDGIVLGVEKLIASKMMLPGS 63

Query: 68  VTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLAKWIADKSQVY 127
              +  + ++ G+   G+ AD R +V +A+ EA  ++  YG  +PV  LA+ +A    + 
Sbjct: 64  NRRIHSVHRHSGMAVAGLAADGRQIVARAKAEATNYQSVYGEAIPVKELAERVASYVHLC 123

Query: 128 TQHAYMRPLGVVAMVLGIDEENGPQLYKCDPAGHFYGHKATSAGLKEQEAINFLEK 183
           T + ++RP G   ++LG  + +GPQLY  +P+G  Y +   + G   Q A   +EK
Sbjct: 124 TLYWWLRPFG-CGVILGGYDRDGPQLYMVEPSGVSYRYFGAAIGKGRQAAKTEIEK 178


>GSVIVT01009737001 assembled CDS
          Length = 260

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

Query: 97  RNEAAEFRFRYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEENGPQLYKC 156
           R+E   + F Y   +PV  L   +ADK+QV TQ ++ RP GV  +V G+DE      Y C
Sbjct: 2   RSECINYSFTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNC 61

Query: 157 DPAGHFYGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSILQ-EDFKAT 215
            P+G+++ ++A + G + Q A  +LE++       S E+ ++ A+ A++  LQ E  K++
Sbjct: 62  -PSGNYFEYQAFAIGSRSQAAKTYLERRFGTFQNSSREDLIKDALFAIRETLQGEKLKSS 120