Jatropha Genome Database

JcCA0141021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141021.10 - phase: 0 
         (135 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024086001 assembled CDS                                        74   3e-14
GSVIVT01024952001 assembled CDS                                        47   2e-06
GSVIVT01016559001 assembled CDS                                        47   3e-06

>GSVIVT01024086001 assembled CDS
          Length = 256

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/38 (86%), Positives = 36/38 (94%)

Query: 66  MAGTGTFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 103
           MAG+G FFVGGNWKCNGTK+SI+KLVSDLN AKLEADV
Sbjct: 1   MAGSGKFFVGGNWKCNGTKDSISKLVSDLNSAKLEADV 38


>GSVIVT01024952001 assembled CDS
          Length = 254

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 6/51 (11%)

Query: 72  FFVGGNWKCNGTKESITKLVSDLNDAKLEA-DVGERI-----FFLPCAVSF 116
           FF+GGNWKCNGT E + K+V+ LN+A++ + D+ E +      FLP   S 
Sbjct: 5   FFIGGNWKCNGTVEEVKKIVTVLNEAEVPSEDIVEVVVSPPFVFLPLVKSL 55


>GSVIVT01016559001 assembled CDS
          Length = 254

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 6/46 (13%)

Query: 72  FFVGGNWKCNGTKESITKLVSDLNDAKL-EADVGERI-----FFLP 111
           FFVGGNWKCNGT E + K+VS LN  ++   DV E +      FLP
Sbjct: 5   FFVGGNWKCNGTGEEVKKIVSTLNAGEVPSGDVVEVVVSPPFVFLP 50