Jatropha Genome Database

JcCA0140901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140901.10 + phase: 0 /pseudo/partial
         (99 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018326001 assembled CDS                                       103   1e-23
GSVIVT01013280001 assembled CDS                                        64   1e-11

>GSVIVT01018326001 assembled CDS
          Length = 288

 Score =  103 bits (258), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/60 (83%), Positives = 57/60 (95%)

Query: 17 IERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPSTSAGKSQLDHRDPRSASLSKNKC 76
          ++RKRINDALDKHLEKSSPSTS+ L++KDK+RLSVPSTSAGKSQLDHRD R+ASL KNKC
Sbjct: 19 LDRKRINDALDKHLEKSSPSTSKGLSSKDKERLSVPSTSAGKSQLDHRDTRAASLPKNKC 78


>GSVIVT01013280001 assembled CDS
          Length = 266

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/38 (78%), Positives = 34/38 (89%)

Query: 17 IERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPST 54
          I+RKRINDALDKHLE+SSPSTS+ LN KDKDR+S  ST
Sbjct: 19 IDRKRINDALDKHLERSSPSTSKGLNGKDKDRVSAQST 56