Jatropha Genome Database
- JcCA0140861.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0140861.10 - phase: 0 /pseudo/partial
(140 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01036957001 assembled CDS 223 2e-59
GSVIVT01012856001 assembled CDS 174 2e-44
GSVIVT01001117001 assembled CDS 85 1e-17
GSVIVT01034567001 assembled CDS 84 2e-17
GSVIVT01022009001 assembled CDS 84 3e-17
GSVIVT01025843001 assembled CDS 83 4e-17
GSVIVT01030426001 assembled CDS 81 2e-16
GSVIVT01033036001 assembled CDS 80 2e-16
GSVIVT01025842001 assembled CDS 79 5e-16
GSVIVT01022275001 assembled CDS 77 2e-15
GSVIVT01008599001 assembled CDS 77 4e-15
GSVIVT01034143001 assembled CDS 67 3e-12
GSVIVT01016232001 assembled CDS 65 1e-11
GSVIVT01005853001 assembled CDS 62 9e-11
GSVIVT01012479001 assembled CDS 61 2e-10
GSVIVT01028245001 assembled CDS 58 1e-09
GSVIVT01005450001 assembled CDS 57 3e-09
GSVIVT01013407001 assembled CDS 55 8e-09
GSVIVT01027631001 assembled CDS 55 1e-08
GSVIVT01027419001 assembled CDS 55 1e-08
GSVIVT01010179001 assembled CDS 55 1e-08
GSVIVT01015825001 assembled CDS 54 2e-08
GSVIVT01024984001 assembled CDS 50 3e-07
>GSVIVT01036957001 assembled CDS
Length = 537
Score = 223 bits (569), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 113/131 (86%)
Query: 10 TVFLAPNLPKVTAVVGLWGFTALSLAVVSLIMFYRCSSRDPGFIKRLEDLGKDADIEDPL 69
TV +APNL KVTAVVGLWG+ +SLAV SLIM YRCSS+DPG+IK+ LG D EDPL
Sbjct: 284 TVLVAPNLTKVTAVVGLWGWICVSLAVCSLIMLYRCSSKDPGYIKKSGGLGNHTDAEDPL 343
Query: 70 LNIDLNYSSIWMGNWSQLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKR 129
LNI+LN SSIW GNWSQLCPTCKIIRPVRSKHC TCKRCVEQFDHHCPWISNCVGK+NK
Sbjct: 344 LNINLNNSSIWTGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKKNKW 403
Query: 130 DFFIFLCLGTL 140
DFF+F+CLG L
Sbjct: 404 DFFVFICLGAL 414
>GSVIVT01012856001 assembled CDS
Length = 635
Score = 174 bits (440), Expect = 2e-44, Method: Composition-based stats.
Identities = 71/132 (53%), Positives = 97/132 (73%)
Query: 6 SYSFTVFLAPNLPKVTAVVGLWGFTALSLAVVSLIMFYRCSSRDPGFIKRLEDLGKDADI 65
+Y + +A LP +TA GL + + LA L+MFY+CS++DPGF++ + +
Sbjct: 302 TYIHSAIIASELPGLTAGFGLLAWFGVFLASAGLVMFYKCSNKDPGFVRMNVNDPQSMKD 361
Query: 66 EDPLLNIDLNYSSIWMGNWSQLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGK 125
E+PLL I++N ++ GNWSQLC TCKI+RP+R+KHCSTC RCVEQFDHHCPW+SNC+GK
Sbjct: 362 EEPLLKIEINNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGK 421
Query: 126 RNKRDFFIFLCL 137
+NK DFF+FL L
Sbjct: 422 KNKWDFFLFLVL 433
>GSVIVT01001117001 assembled CDS
Length = 441
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 26/130 (20%)
Query: 31 ALSLAVVSLIMFYRCSSRDPGFIKRLEDLGKDADIEDPLLNIDLNYSSIWMGNWS----- 85
+++L V +I+ + S+RDPG I R + +P + S+ W+G+ S
Sbjct: 94 SVALTVYIMILLFLTSARDPGIIPR------NPHPPEPEDDTASGISTDWVGSQSGAPNI 147
Query: 86 ---------------QLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRD 130
+ C TC + RP R HCS C CV++FDHHCPW+ C+GKRN R
Sbjct: 148 PPTKDVMVNGMVVKVKYCQTCMLYRPPRCSHCSICNNCVDRFDHHCPWVGQCIGKRNYRF 207
Query: 131 FFIFLCLGTL 140
FF+F+ T+
Sbjct: 208 FFMFVSSTTM 217
>GSVIVT01034567001 assembled CDS
Length = 427
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 30 TALSLAVVSLIMFYRCSSRDPGFIKRLE-----DLGKDADIE-----DPLLNIDLNYSSI 79
A++ + L++ + S+RDPG I R ++ D+ +E P L +
Sbjct: 68 AAIAFTIYVLLLLFLTSARDPGIIPRNSHPPEGEIRYDSSVEAGGRHTPSLQFPRTKEVM 127
Query: 80 WMGNWSQL--CPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFLCL 137
G ++ C TC I RP R HCS C CVE+FDHHCPW+ CVG RN R FF+F+
Sbjct: 128 VNGIAVKVKYCETCMIYRPPRCSHCSICNNCVERFDHHCPWVGQCVGLRNYRFFFMFVSS 187
Query: 138 GTL 140
TL
Sbjct: 188 STL 190
>GSVIVT01022009001 assembled CDS
Length = 393
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
Query: 23 VVGLWGFTALSLAVVSLIMFYRCSSRDPGFIKRLEDLGKDADIEDPLLNIDLNYSSIWMG 82
+ G+ +T+L V +++F S DPG +K E++ K P NI +
Sbjct: 108 ISGVHRYTSLLAVGVGVVLFLLTSFSDPGTVKA-ENVSKYLS-AYPYDNIIYS------- 158
Query: 83 NWSQLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFL 135
+ C TC+I +P RSKHCS C RCV +FDHHC W++NC+G+RN R F FL
Sbjct: 159 --EKECSTCRIPKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRFFMAFL 209
>GSVIVT01025843001 assembled CDS
Length = 359
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 61/125 (48%), Gaps = 14/125 (11%)
Query: 29 FTALSLAVVSLIMFYRCSSRDPGFIKR-----LEDLGKDAD-----IED--PLLNIDLNY 76
FT L L + L Y S RDPG + R D G D I D P L I
Sbjct: 70 FTGLILTFLDLAFLYMTSGRDPGIVPRNTQPPESDDGLDGTSSLEWINDATPELKIPRTK 129
Query: 77 SSIWMGNWSQL--CPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIF 134
+ G ++ C TC I RP R+ HCS C CV++FDHHCPW+ C+ RN R F +F
Sbjct: 130 DVLINGYIIKVKYCDTCMIYRPPRASHCSICNNCVQKFDHHCPWVGQCIALRNYRFFILF 189
Query: 135 LCLGT 139
+ L T
Sbjct: 190 ISLST 194
>GSVIVT01030426001 assembled CDS
Length = 356
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 6 SYSFTVFLAPNLPKVTAVVGLWGFTALSLAVVSLIMFYRCSSRDPGFIKRLEDLGKDADI 65
S+ F V++ +LP + ++ + +L L +V L S+ DPG I R E + ++
Sbjct: 121 SWIFAVYIGDDLPNHSTLIITF---SLILTLVVLGNMILVSTMDPGIIPRNEQACVE-EV 176
Query: 66 EDPLLNIDLNYSSIWMGNWSQLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGK 125
+ + +N + + + C CKI RP RS HC+ C CVE+FDHHCPWI CVG
Sbjct: 177 DTTKKCVKVNGVELKL----KYCRICKIFRPPRSCHCAVCDNCVEKFDHHCPWIGQCVGL 232
Query: 126 RNKRDFFIFL 135
RN R + +F+
Sbjct: 233 RNYRFYLMFM 242
>GSVIVT01033036001 assembled CDS
Length = 489
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 23/132 (17%)
Query: 28 GFTALSLAVV----SLIMFYRCSSRDPGFIKR----LEDLGKDADIED-----PLL---- 70
G + + +AVV L++ S RDPG I R E G D E P L
Sbjct: 81 GISIMVVAVVFTFYVLVLLLLTSGRDPGIIPRNAHPPEPEGYDGSAEGVGGQTPQLRLPR 140
Query: 71 --NIDLNYSSIWMGNWSQLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNK 128
+++N ++ + + C TC + RP R HCS C CVE+FDHHCPW+ C+G RN
Sbjct: 141 IKEVEVNGVTVKI----KYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNY 196
Query: 129 RDFFIFLCLGTL 140
R FF+F+ TL
Sbjct: 197 RFFFMFVFSTTL 208
>GSVIVT01025842001 assembled CDS
Length = 428
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 15/122 (12%)
Query: 34 LAVVSLIMFYRCSSRDPGFIKRLE---DLGKDADIEDPLL--------NIDLNYSSIWMG 82
L ++ L+ + SSRDPG + R +L + D+ P + ++ L + +
Sbjct: 100 LTILDLMFLFVTSSRDPGIVPRNSKPPELDEAFDVTTPSMEWVNGRTPHLKLPRTKDVLV 159
Query: 83 NWS----QLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFLCLG 138
N + C TC + RP R HCS C CV++FDHHCPW+ C+G RN R FF+F+
Sbjct: 160 NGHIVKVKYCDTCLLYRPPRVSHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFFMFISTS 219
Query: 139 TL 140
T+
Sbjct: 220 TI 221
>GSVIVT01022275001 assembled CDS
Length = 422
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 31 ALSLAVVSLIMFYRCSSRDPGFIKR-----LEDL-------GKDADIEDPLLNIDLNYSS 78
A+ + L++ S+RDPG I R E+ + + P L
Sbjct: 67 AIVFTIYVLVLLLCTSARDPGIIPRNSHPPEEEFCYESSASAEAGGRQTPSLQFPRTKEV 126
Query: 79 IWMGNWSQL--CPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFLC 136
I G ++ C TC + RP R HCS C CVE+FDHHCPW+ C+G RN R FF+F+
Sbjct: 127 IVNGYPVRVKYCETCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGMRNYRYFFLFVS 186
Query: 137 LGTL 140
TL
Sbjct: 187 SSTL 190
>GSVIVT01008599001 assembled CDS
Length = 419
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 46 SSRDPGFIKR----LEDLGKDADI----EDPLLNIDLNYSSIWMGNWSQL--CPTCKIIR 95
S RDPG I R E G D + P L + + G ++ C TC + R
Sbjct: 103 SGRDPGIIPRNAHPPEPEGYDGTEVGAGQTPQLRLPRTKDVVVNGITVKVKYCDTCMLYR 162
Query: 96 PVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTL 140
P R HCS C CVE+FDHHCPW+ C+G RN R FF+F+ TL
Sbjct: 163 PPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVFSTTL 207
>GSVIVT01034143001 assembled CDS
Length = 274
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%)
Query: 86 QLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTL 140
+ C C +P R+ HC C+RCV + DHHC WI+NCVG N + FFIF+ L
Sbjct: 96 RYCQKCAHYKPARAHHCRVCRRCVLRMDHHCIWINNCVGHANYKAFFIFVLYAVL 150
>GSVIVT01016232001 assembled CDS
Length = 276
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 34 LAVVSLIMFYRCSSRDPGFIKRLEDLGKDADIEDPLLNIDLNYSSIWMGNWSQLCPTCKI 93
LA +SL + C S DPG R+ D E + + + + G + C C I
Sbjct: 51 LAFLSLFSLFVCVSSDPG---RVPPSYVPDDEESNVSDQETKRN----GGQLRHCDKCCI 103
Query: 94 IRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTL 140
+P R+ HC C+RCV + DHHC WI+NCVG N + F + + T+
Sbjct: 104 YKPPRAHHCRVCRRCVLRMDHHCLWINNCVGYWNYKAFVMLVLYATI 150
>GSVIVT01005853001 assembled CDS
Length = 454
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 85 SQLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGT 139
S C C +++P R+KHC C +CV QFDHHC W+ C+G+ N F+ ++C T
Sbjct: 271 SWTCTYCNVLQPPRAKHCHDCDKCVLQFDHHCVWLGTCIGQGNHCRFWWYICEET 325
>GSVIVT01012479001 assembled CDS
Length = 540
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 88 CPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFL 135
C C++ SKHC C +CV+ FDHHC W++NC+GK+N R FF +
Sbjct: 165 CSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFALM 212
>GSVIVT01028245001 assembled CDS
Length = 506
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 27/41 (65%)
Query: 87 LCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRN 127
C C SKHC +C RCVE FDHHC W++NC+GKRN
Sbjct: 155 FCALCDFEVKKNSKHCRSCNRCVEGFDHHCRWLNNCIGKRN 195
>GSVIVT01005450001 assembled CDS
Length = 178
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 86 QLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKR 129
+ C C + +P R HCS C RC+ + DHHC W+ NCVG +N +
Sbjct: 11 RFCRKCNLFKPPRCHHCSVCGRCILKMDHHCVWVVNCVGAKNYK 54
>GSVIVT01013407001 assembled CDS
Length = 484
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 3/39 (7%)
Query: 99 SKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFLCL 137
SKHC +C +CV+ FDHHC W++NCVG++N + F+CL
Sbjct: 167 SKHCRSCDKCVDGFDHHCRWLNNCVGRKN---YITFVCL 202
>GSVIVT01027631001 assembled CDS
Length = 300
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 67 DPLLNIDLNYSSIWMGNWS-QLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGK 125
DPL D S + C C ++P R HCS C RC+ + DHHC W+ NCVG
Sbjct: 98 DPLTGSDFGVSPADASKQRVRYCRKCSQMKPPRCHHCSVCGRCILKMDHHCVWVVNCVGA 157
Query: 126 RNKR 129
N +
Sbjct: 158 LNYK 161
>GSVIVT01027419001 assembled CDS
Length = 308
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 42 FYRCSSRDPGFI-KRLEDLGKDADIED-PLLNIDLNYSSIWMGNWSQ-----------LC 88
++ RDPG + + + ++ ++E+ P+ + D WS C
Sbjct: 71 YFMVVFRDPGSVPENWRPVSEEYNLEEGPMTSSDCVVPETLNSTWSSSDGQERRPAVGYC 130
Query: 89 PTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKR 129
C+ +P R HCS C+RCV + DHHC W+ NCVG N +
Sbjct: 131 IQCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGACNYK 171
>GSVIVT01010179001 assembled CDS
Length = 336
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 87 LCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFL 135
C C + R+ HC +C C+ DHHCP+I NCVG N R F FL
Sbjct: 145 FCHYCSKPKSPRTHHCRSCGMCILDMDHHCPFIGNCVGAANHRHFIAFL 193
>GSVIVT01015825001 assembled CDS
Length = 678
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 99 SKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFLCL 137
SKHC +C +CV+ FDHHC W++NCVG++N F + +
Sbjct: 159 SKHCRSCDKCVDGFDHHCRWLNNCVGRKNYVTFISLMAI 197
>GSVIVT01024984001 assembled CDS
Length = 311
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 26 LWGFTALSLAVVSLIMFYRCSSRDPGFIKRLEDLGKDADIEDPLLNIDLNYSSIWMGNWS 85
L G V+ +I Y S DPGF+ D ED + ++ G++S
Sbjct: 103 LMGIVLNGEIVMLIIGLYSILSSDPGFVTSRSSC-SDNHAEDSFSEDEAHFE----GSFS 157
Query: 86 QLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFL 135
R ++C +CK V+ FDHHCP NC+G++N F + L
Sbjct: 158 SR----------RVRYCKSCKAYVKGFDHHCPAFGNCIGQKNHVLFMVLL 197