Jatropha Genome Database

JcCA0140751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140751.20 - phase: 2 /TE/partial
         (212 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000641001 assembled CDS                                       183   5e-47
GSVIVT01012382001 assembled CDS                                       149   9e-37
GSVIVT01009548001 assembled CDS                                       117   5e-27
GSVIVT01028343001 assembled CDS                                        97   4e-21
GSVIVT01013655001 assembled CDS                                        87   6e-18
GSVIVT01031724001 assembled CDS                                        80   8e-16
GSVIVT01015960001 assembled CDS                                        76   1e-14
GSVIVT01013341001 assembled CDS                                        60   6e-10
GSVIVT01019138001 assembled CDS                                        59   2e-09
GSVIVT01026124001 assembled CDS                                        58   3e-09
GSVIVT01031819001 assembled CDS                                        57   6e-09

>GSVIVT01000641001 assembled CDS
          Length = 947

 Score =  183 bits (465), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 126/195 (64%)

Query: 1   DIFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGD 60
           DI ++V ++SRYM+NP + H    ++I RY++ T D+GL YKKGK   L+G+ D+DYAGD
Sbjct: 252 DIMHSVSLISRYMENPTELHFLAAKKICRYLQGTKDFGLFYKKGKRSDLIGFTDSDYAGD 311

Query: 61  HDTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQ 120
            D RRST+ Y+F LG+G +SW SK+QP V+LSTT             + WL +++ +LH 
Sbjct: 312 QDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEAEFVAATVCACQAIWLRKILEELHL 371

Query: 121 PVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIAD 180
               A  ++CDN S I+L++NPV H R+KH++V Y+F+R+      I++   +++ Q+AD
Sbjct: 372 KQVGATTIFCDNSSTIKLSKNPVLHGRSKHIDVKYYFLRDLSNDGVIDLVYCRSENQVAD 431

Query: 181 LLTKSLNVGKFEHFR 195
           + TK L +  F   R
Sbjct: 432 IFTKPLKLAVFLELR 446


>GSVIVT01012382001 assembled CDS
          Length = 952

 Score =  149 bits (376), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 114/200 (57%)

Query: 6   VGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGDHDTRR 65
           V ++S+YM  P   HL +V+RILRY+K TI  G++ ++     ++G+ D+D+AG+   RR
Sbjct: 751 VSLVSQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRR 810

Query: 66  STTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQPVDYA 125
           STT Y   +G   +SW SK+QP V+ S+                WL  L+ DL       
Sbjct: 811 STTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDLGFSPTSP 870

Query: 126 VPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIADLLTKS 185
           + L+CDNQ+A+ +A NPVFH RTKH+EV  HF+R++V  + I+   +++  Q+AD  TK 
Sbjct: 871 MKLFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQLADAFTKV 930

Query: 186 LNVGKFEHFRCQLDVIQRMG 205
           L+   F     +L  I  + 
Sbjct: 931 LSSTVFHRLMFKLGSIDPLA 950


>GSVIVT01009548001 assembled CDS
          Length = 849

 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 112/196 (57%), Gaps = 4/196 (2%)

Query: 1   DIFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGD 60
           +I + V V+ RY+ N  ++H    ++++RY++ T D+ L+Y++  + ++VGY ++D+ G 
Sbjct: 613 NIVFIVNVLGRYLSNLGQYHWVAAKKVMRYLQRTNDFMLVYRRVDNLEVVGYSNSDFNGC 672

Query: 61  HDTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQ 120
            D  +ST+ Y+F L  G ISW S +Q  ++ ST                WL +L+++L Q
Sbjct: 673 SDDCKSTSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVACYGASSQVVWLRKLISEL-Q 731

Query: 121 PVDY---AVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQ 177
            VD     + +YCDN + +  ++N      +KH+E+ Y  V++ V +E+I ++ ++T+  
Sbjct: 732 VVDSIFRPIVIYCDNNATVFYSKNNKISTSSKHMEIKYLIVKDLVKKEDIVIKHIRTESM 791

Query: 178 IADLLTKSLNVGKFEH 193
           +AD LTK L    F+ 
Sbjct: 792 LADPLTKGLKPIMFKE 807


>GSVIVT01028343001 assembled CDS
          Length = 2295

 Score = 97.4 bits (241), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/123 (40%), Positives = 69/123 (56%)

Query: 64   RRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQPVD 123
            RRST+ Y   +G   ISW SK+Q  V+ S+                WL  L+ +L    D
Sbjct: 1467 RRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGKD 1526

Query: 124  YAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIADLLT 183
              + L CDNQ+A+ +A NPVFH RTKH+EV  HF+REK+    +    V ++ Q+AD+ T
Sbjct: 1527 EQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADIFT 1586

Query: 184  KSL 186
            KSL
Sbjct: 1587 KSL 1589


>GSVIVT01013655001 assembled CDS
          Length = 4396

 Score = 87.0 bits (214), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 10/135 (7%)

Query: 9    MSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGDHDTRRSTT 68
            +S++M  P   H   V+R+LRY+  T+D+G+  ++     L  + D+D+AG+ D   ST+
Sbjct: 4258 LSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDFTSTS 4317

Query: 69   RYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDL-----HQPVD 123
             Y+  LG   ISW SK+Q TV+ S+T               W+  L+ +L      QPV 
Sbjct: 4318 AYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQQPV- 4376

Query: 124  YAVPLYCDNQSAIRL 138
                +YCDN  A  L
Sbjct: 4377 ----IYCDNVGATHL 4387


>GSVIVT01031724001 assembled CDS
          Length = 1135

 Score = 79.7 bits (195), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 59/122 (48%)

Query: 1    DIFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGD 60
            DI Y +    ++M  P   HL+ V+R+LRY+K ++ YGL ++      L+ Y DAD A  
Sbjct: 1006 DIAYTINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADGASC 1065

Query: 61   HDTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQ 120
             D RRST  Y        ISW + +Q  VS S+               TW+  L+ +L  
Sbjct: 1066 PDDRRSTNGYCIFFRGNLISWSASKQKVVSRSSIESKYRGLANATIELTWIQSLLKELFV 1125

Query: 121  PV 122
            P+
Sbjct: 1126 PL 1127


>GSVIVT01015960001 assembled CDS
          Length = 1205

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 59/94 (62%)

Query: 110 WLIQLMNDLHQPVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEM 169
           W+ +L+ +L       + LYCDN++ I +A NPV H RTKHVEV  HF++EK+    + M
Sbjct: 2   WIRRLLEELKMTGSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLVCM 61

Query: 170 RQVKTDKQIADLLTKSLNVGKFEHFRCQLDVIQR 203
             + T++Q+AD+ TK L+  +F+     +++ +R
Sbjct: 62  TYIPTEEQVADVFTKGLHKRQFDFLCLCVNLAER 95


>GSVIVT01013341001 assembled CDS
          Length = 503

 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 3/128 (2%)

Query: 13  MQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGDHDTRRSTTRYLF 72
           M +P + H+ VV +IL+Y+K T   GL + K    K+  + DAD+AG  + RRST+ Y  
Sbjct: 1   MHSPYEAHMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCT 60

Query: 73  KLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQPVDYAVPLYCDN 132
            +    I+W SK+Q  V+ S+                W+ +++ +L   +    PL   +
Sbjct: 61  FVFGNLITWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEELKITIH---PLAMIS 117

Query: 133 QSAIRLAE 140
            S + L E
Sbjct: 118 NSLLPLLE 125


>GSVIVT01019138001 assembled CDS
          Length = 149

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 119 HQPVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEM 169
           HQ  D A  L CDN+SAI +A+N VFH+RT+H+ V YHF++E +   E+++
Sbjct: 9   HQGEDEATYLLCDNKSAIAIAKNYVFHSRTRHIAVKYHFIKEAISDGEVQL 59


>GSVIVT01026124001 assembled CDS
          Length = 1018

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 53/83 (63%), Gaps = 1/83 (1%)

Query: 110 WLIQLMNDLHQPVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEM 169
           WL  L+++L +  +  + L+ D+ SAI LA+N VFH+++KH++  YHF+R  +  + + +
Sbjct: 3   WLHGLLDELAKKQEMRI-LHSDSHSAIFLAKNSVFHSKSKHIQTKYHFIRYLIEDKLVIL 61

Query: 170 RQVKTDKQIADLLTKSLNVGKFE 192
            ++   K  AD+LTK + + K +
Sbjct: 62  EKIYGSKNPADMLTKGVTIEKLK 84


>GSVIVT01031819001 assembled CDS
          Length = 149

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 20  HLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGDHDTRRSTTRYLFKLGSGTI 79
           H E V+ +LRY++ T      +++G + KL GY D D++ + D  +ST  Y+F LG+  I
Sbjct: 68  HYEAVKWMLRYLQGTTKNCPCFRRG-ELKLQGYVDIDFSNEIDNWKSTIGYVFTLGTTAI 126

Query: 80  SWCSKRQPTVSLST 93
           SW S+ Q  V LST
Sbjct: 127 SWISQLQKIVVLST 140