Jatropha Genome Database

JcCA0140751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140751.10 + phase: 0 
         (237 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021712001 assembled CDS                                       266   9e-72
GSVIVT01021714001 assembled CDS                                       263   7e-71

>GSVIVT01021712001 assembled CDS
          Length = 237

 Score =  266 bits (679), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 133/237 (56%), Positives = 154/237 (64%)

Query: 1   MCPKGFTVDLCKPHLFQVGYLGEHYDGWVHQPIITKESPRFFQSEILEWVTRSXXXXXXX 60
           M  K FTVDL KP +FQVG+LGE Y+ WVHQPII+KE PRFF S+ILE  TR+       
Sbjct: 1   MVSKDFTVDLNKPLVFQVGHLGEAYEEWVHQPIISKEGPRFFGSDILESTTRTVWWVIPL 60

Query: 61  XXXXMACWCISISIRMGHSSSNVALMVVFGIFVWTFLEYLLHRFLFHFKTKTYWGNTIHY 120
               + CW +S+S+RMG     +A  V  G+F+WTFLEY LHRFLFH KTK+YWGNTIHY
Sbjct: 61  VWLPVVCWAVSMSVRMGLPLLQLAAAVAGGLFIWTFLEYTLHRFLFHIKTKSYWGNTIHY 120

Query: 121 LLHGLHHKFPMDRFRLVMPPLATAXXXXXXXXXXXXVGTPSTAPAVFGGTLLGYVIYDLT 180
           LLHG HHK PMD  RLV PP A A            +  PS AP +FGG LLGYVIYD+T
Sbjct: 121 LLHGCHHKHPMDGLRLVFPPAAAAILCLPFWNLMKLLSPPSVAPTLFGGGLLGYVIYDVT 180

Query: 181 HYYLHHGQPSTXXXXXXXXXXXXXXFKVQDVGFGITSTLWDIVFGTLPPIQVIEKKE 237
           HYYLHHG+PS               F++ D GFGITST WD VFGTLPP +  EK  
Sbjct: 181 HYYLHHGKPSKGITQNMKRYHMNHHFRIDDKGFGITSTFWDRVFGTLPPAKAAEKSR 237


>GSVIVT01021714001 assembled CDS
          Length = 295

 Score =  263 bits (671), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 131/237 (55%), Positives = 155/237 (65%)

Query: 1   MCPKGFTVDLCKPHLFQVGYLGEHYDGWVHQPIITKESPRFFQSEILEWVTRSXXXXXXX 60
           M  + FTVDL KP +FQVG+LGE Y  WVHQPI++KE PRFF S+  E +TR+       
Sbjct: 59  MVAQDFTVDLSKPLVFQVGHLGEDYQEWVHQPIVSKEGPRFFDSDFWEALTRTKWWAIPL 118

Query: 61  XXXXMACWCISISIRMGHSSSNVALMVVFGIFVWTFLEYLLHRFLFHFKTKTYWGNTIHY 120
               +  W IS S+RMG     + LM+  GIFVWT +EY LHRFLFH KTKTYWGNTIHY
Sbjct: 119 IWLPVVTWSISRSVRMGLELPRLVLMMAIGIFVWTLMEYSLHRFLFHIKTKTYWGNTIHY 178

Query: 121 LLHGLHHKFPMDRFRLVMPPLATAXXXXXXXXXXXXVGTPSTAPAVFGGTLLGYVIYDLT 180
           LLHG HHK PMD  RLV PP   A            + TP+TAPA+FGG LLGYV+YD+T
Sbjct: 179 LLHGCHHKHPMDGLRLVFPPAGAAVICVPLWNLIKFLSTPTTAPALFGGGLLGYVMYDVT 238

Query: 181 HYYLHHGQPSTXXXXXXXXXXXXXXFKVQDVGFGITSTLWDIVFGTLPPIQVIEKKE 237
           HYYLHHGQPS+              F++QD+GFGITS+LWD VFGTLPP +   K  
Sbjct: 239 HYYLHHGQPSSKVPRNLKKYHLNHHFRIQDMGFGITSSLWDRVFGTLPPSKAPGKSR 295