Jatropha Genome Database

JcCA0140011.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140011.20 - phase: 0 
         (345 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038697001 assembled CDS                                       246   1e-65
GSVIVT01038695001 assembled CDS                                       245   3e-65
GSVIVT01038696001 assembled CDS                                       210   7e-55
GSVIVT01019548001 assembled CDS                                       202   2e-52
GSVIVT01020848001 assembled CDS                                       162   2e-40

>GSVIVT01038697001 assembled CDS
          Length = 338

 Score =  246 bits (629), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/334 (42%), Positives = 201/334 (60%), Gaps = 26/334 (7%)

Query: 1   MASEREDFSLSGPLHLTVVDWTDAHHRRSVAASLVQGVYILERDRQLKRQGPEALANPWW 60
           M+ +REDF  +GP  LT VDW + HH R+VAASLVQG Y LE DRQ   Q P+     WW
Sbjct: 1   MSVQREDFEHTGPKQLTDVDWANDHHLRAVAASLVQGAYNLEFDRQ-DSQDPQGR---WW 56

Query: 61  EFFHFRLLRKLVDDVDSSIFGAIYEFKPPISCSNHSLDKSPRYVIAFRGTVTKPDSFSRD 120
            FFHF L  KL+DD DSSI+G +YE K   +  NH  + +P++VIAFRGT+    + SRD
Sbjct: 57  HFFHFELKHKLIDDKDSSIYGVVYEIK--CTYPNHLPESTPKFVIAFRGTII--STKSRD 112

Query: 121 LELDIHIIRNGLH-ETSRFEIGIQAIRNVVATVGESNVWLAGHSLGAAMAMLAGKTMAKT 179
           ++L++ +    LH +  RF+  ++A++ VV     +N+WL GHSLGA++AML GK+MA+ 
Sbjct: 113 MKLNMKVFAGKLHKDKPRFKHALEAVKAVVQEAWPANIWLVGHSLGASIAMLVGKSMAQE 172

Query: 180 GVLIQAFLFNSPFLSAPIER-IKDKRVKHGLRIAGSVITAGLAFAATVKKNNQNSRSVDP 238
           G  ++ FLFN PFL   + + IK+  +K G+    +VI AG++F   V  ++        
Sbjct: 173 GKNLKTFLFNPPFLRYSLSKNIKNPTLKDGILSTKNVIKAGISF---VGGDHLWQELHHQ 229

Query: 239 FSALSAWIPSIFVNPGDHICSEYIGYFEHRKKMDDIGIGAIERLATQNSIGGLIMGAIGK 298
           F+ LS WIP +FVN  D +CS YI +F +RK  D+I            SI   I  A  K
Sbjct: 230 FNKLSPWIPYLFVNQDDPLCSGYIDHFRNRKIKDEI-----------RSIRSAIKAAFVK 278

Query: 299 ESE-PLHLIPSAILTTNLTPSRDFKEAHGIHQWW 331
           + + P++L+P A LT +   S    +AHG+ QWW
Sbjct: 279 DPQLPIYLLPKAYLTISKISSSPL-QAHGLKQWW 311


>GSVIVT01038695001 assembled CDS
          Length = 740

 Score =  245 bits (625), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 143/336 (42%), Positives = 203/336 (60%), Gaps = 22/336 (6%)

Query: 1   MASEREDFSLSGPLHLTVVDWTDAHHRRSVAASLVQGVYILERDRQLKRQGPEALANPWW 60
           MA E EDF L+GP  L VVDW + HH R+VAASLVQG Y  E +RQ K Q P+  ++ WW
Sbjct: 342 MAPELEDFDLTGPKQLAVVDWRNNHHCRAVAASLVQGAYNSEHNRQ-KSQDPKVQSSRWW 400

Query: 61  EFFHFRLLRKLVDDVDSSIFGAIYEFKPPISCSNHSLDKSPRYVIAFRGTVTKPDSFSRD 120
             FHF + R L+DD DSSI+G +YEFK   +  N   + +P+ VIAFRGT+ K  S  +D
Sbjct: 401 CSFHFEVKRVLIDDKDSSIYGVVYEFKH--TNPNSLPECAPKCVIAFRGTILKSSSAKQD 458

Query: 121 LELDIHIIRNGLH-ETSRFEIGIQAIRNVVATVGESNVWLAGHSLGAAMAMLAGKTMAK- 178
           ++L+I ++   L  + SRF+  + A++ VV     +N+WLAGHSLG+A+AML GK+MA+ 
Sbjct: 459 MKLNIKLLTAELRKDNSRFKPALAAVKEVVQEAEPANIWLAGHSLGSAIAMLVGKSMAQE 518

Query: 179 TGVLIQAFLFNSPFLSAPIE-RIKDKRVKHGLRIAGSVITAGLAFAATVKKNNQNSRSVD 237
            G  ++ FLFN PFL + +   I   R+++ +    +VI AG++F   V  ++       
Sbjct: 519 EGKYLKTFLFNPPFLRSSLSMNINSPRLENVICSTKNVIKAGISF---VGGDHLWQERHH 575

Query: 238 PFSALSAWIPSIFVNPGDHICSEYIGYFEHRKKMDDIGIGAIERLATQNSIGGLIMGAIG 297
            F+ LS WIP +FVN  D ICS YI +F +RK   +I            SI   +  A+G
Sbjct: 576 QFNKLSPWIPYLFVNKDDPICSGYIDHFGNRKIESEIC-----------SIRSALRAAVG 624

Query: 298 KESE-PLHLIPSAILT-TNLTPSRDFKEAHGIHQWW 331
            + + P+HL+P A LT +  + S D  EAHG+ QWW
Sbjct: 625 IDPQLPVHLLPKAYLTISENSSSCDVLEAHGLKQWW 660


>GSVIVT01038696001 assembled CDS
          Length = 272

 Score =  210 bits (535), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 105/226 (46%), Positives = 153/226 (67%), Gaps = 5/226 (2%)

Query: 1   MASEREDFSLSGPLHLTVVDWTDAHHRRSVAASLVQGVYILERDRQLKRQGPEALANPWW 60
           MA ER +F L+GP  LT VDWT+ HHRR+V ASLV+G Y LE DRQ  R  P+  ++ WW
Sbjct: 1   MAIERGNFDLTGPKQLTEVDWTNNHHRRAVVASLVEGAYNLEYDRQESRD-PQVQSSRWW 59

Query: 61  EFFHFRLLRKLVDDVDSSIFGAIYEFKPPISCSNHSLDKSPRYVIAFRGTVTKPDSFSRD 120
            FFHF+L R LVDD DSSI+GA+YE K   +  NH    +P+YVIAFRGT+ K  +  RD
Sbjct: 60  NFFHFQLKRALVDDKDSSIYGAVYEIKH--TYLNHLPKCAPKYVIAFRGTILKLSTAKRD 117

Query: 121 LELDIHIIRNGLH-ETSRFEIGIQAIRNVVATVGESNVWLAGHSLGAAMAMLAGKTMAKT 179
           L+L+I ++ + LH +  RF+  ++A++ VV   G +N+WLAGHSLG+++AM+ GK+MA+ 
Sbjct: 118 LKLNIKVLTDVLHMDRHRFKPALEAVQQVVQEAGSANIWLAGHSLGSSIAMMVGKSMAQE 177

Query: 180 GVLIQAFLFNSPFL-SAPIERIKDKRVKHGLRIAGSVITAGLAFAA 224
           G  ++AFLFN P L +  ++ I ++ ++  +R+  ++   G  F  
Sbjct: 178 GKCMEAFLFNPPLLGNVLLKIIGNQYLQDAMRLTETLCNFGTLFVG 223


>GSVIVT01019548001 assembled CDS
          Length = 186

 Score =  202 bits (514), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/159 (64%), Positives = 125/159 (78%)

Query: 1   MASEREDFSLSGPLHLTVVDWTDAHHRRSVAASLVQGVYILERDRQLKRQGPEALANPWW 60
           M SERE+F+LSGPLHLT VDW + HH+RSVAASLVQGVYILERDRQ KRQG +ALA PWW
Sbjct: 1   MPSERENFNLSGPLHLTTVDWKNTHHQRSVAASLVQGVYILERDRQEKRQGSQALAPPWW 60

Query: 61  EFFHFRLLRKLVDDVDSSIFGAIYEFKPPISCSNHSLDKSPRYVIAFRGTVTKPDSFSRD 120
           EFF F+++ +LVDD DS IFGAIY+F P  S    S ++SP YVIAFRGT+ KP S S+D
Sbjct: 61  EFFQFQIVLQLVDDADSCIFGAIYKFTPQASPGTLSTNESPHYVIAFRGTIRKPHSVSQD 120

Query: 121 LELDIHIIRNGLHETSRFEIGIQAIRNVVATVGESNVWL 159
           L+LD+ +++NGLH TSRFEI +QA+RN+        +WL
Sbjct: 121 LKLDLQLLQNGLHRTSRFEIAMQAVRNMPWQCLLERIWL 159


>GSVIVT01020848001 assembled CDS
          Length = 383

 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 173/347 (49%), Gaps = 39/347 (11%)

Query: 8   FSLSGPLHLTVVDW--------TDAHHRRSVAASLVQGVYILERDRQLKRQGPEALANPW 59
           F +SGP +++  +W         D +++R+V A  +Q VY+LE DRQ  R    ALA  W
Sbjct: 27  FHVSGPRNVSSPNWRDLINSSWKDGNYKRTVIACFIQAVYLLELDRQENRTEENALAPKW 86

Query: 60  WEFFHFRLLRKLVDDVDSSIFGAIYEFKPPISCSNHSLDK---SPRYVIAFRGTVTKPDS 116
           W  F ++L + LVD+ D SIFGAI E+    + S+  L +   +PR V+A RGT+ K  +
Sbjct: 87  WIPFKYKLAQTLVDERDGSIFGAILEWDRAAALSDLILIRPSGAPRAVLALRGTLLKSPT 146

Query: 117 FSRDLELDIHIIR-NGLHETSRFEIGIQAIRNVVATVGESNVWLAGHSLGAAMAMLAGKT 175
             RD+E D+  +    L  + RF+   +A+++V    G SNV +AGHSLGA  A+  GKT
Sbjct: 147 IRRDIEDDLRFLAWESLKGSVRFKGAFEALKSVADRYGSSNVCVAGHSLGAGFALQVGKT 206

Query: 176 MAKTGVLIQAFLFNSPFLSAPIERIKDKRVKHGLRIAGSVITAGLAFAATVKKNNQNSRS 235
           +AK G+ +   LFN P +S  +  +++   K G   A     + L  ++  + +N++   
Sbjct: 207 LAKEGIFVDTHLFNPPSVSLAMS-LRNIGEKAGF--AWQRFKSMLPSSSETQVSNEDWGQ 263

Query: 236 VDPFSALSAWIPSIFVNPGDHICSEYIGYFEHRKKMDDIGIGAIERLATQNSIGGLIMGA 295
             P      W+P ++VN  D+IC  Y               GA +    + ++       
Sbjct: 264 T-PSVGGKKWVPHLYVNNSDYICCHYTD-----------PTGAEDNNGEKENVC------ 305

Query: 296 IGKESEPLHLIPSAILTTNLTPSRDFKEAHGIHQWWRPDLDVQSKLY 342
                 P +   +A L       + F EAHG+ QWW  DL++Q  L+
Sbjct: 306 ------PTNGPMAAKLFVMSKGKQKFMEAHGLQQWWSEDLELQLALH 346