Jatropha Genome Database

JcCA0140011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140011.10 + phase: 1 /pseudo/partial
         (213 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027151001 assembled CDS                                       107   3e-24
GSVIVT01026977001 assembled CDS                                        65   3e-11
GSVIVT01029849001 assembled CDS                                        47   4e-06

>GSVIVT01027151001 assembled CDS
          Length = 130

 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 59/62 (95%)

Query: 76  QYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPLSS 135
           QYV+VKNPN+ +F+HYDS++QL+YSGS+VGFMFIPAGKIDAGRTQYM ATFAV+SFP++ 
Sbjct: 67  QYVAVKNPNRDAFTHYDSSVQLVYSGSEVGFMFIPAGKIDAGRTQYMLATFAVKSFPVTQ 126

Query: 136 SP 137
           +P
Sbjct: 127 AP 128


>GSVIVT01026977001 assembled CDS
          Length = 220

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 21/136 (15%)

Query: 78  VSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPLSSSP 137
           VSVKNPN ASF + ++T  L YSG+ +G    P G+  A RT  M  T  +    L S+P
Sbjct: 100 VSVKNPNFASFRYKNTTTTLFYSGTVIGEARGPPGQAKARRTMKMNVTIEIILDSLMSNP 159

Query: 138 DAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEAKAGC 197
               ++    + G+LP               M   SR+   GRV++L I   HV  K  C
Sbjct: 160 SLLTDI----SSGILP---------------MNTYSRV--PGRVKMLKIIKKHVVVKMNC 198

Query: 198 RVAIAVSDGSVLGFHC 213
            V + ++  S+    C
Sbjct: 199 SVTVNITSRSIQEQKC 214


>GSVIVT01029849001 assembled CDS
          Length = 215

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 20/136 (14%)

Query: 78  VSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPLSSSP 137
           + V+NPN ASF H      LLY G QVG + I  G I   R+  + +   +Q   ++S  
Sbjct: 94  ILVENPNHASFKHGSGQSILLYQGEQVGDVEIYPGNIPGRRSTTIPSRLTLQVDKVASET 153

Query: 138 DAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEAKAGC 197
              V         +L G              + +++R  + GRV  L +   HV A + C
Sbjct: 154 LHLVQ-------DILAG-------------QLAMDTRTRIPGRVTFLGLIRKHVVAISDC 193

Query: 198 RVAIAVSDGSVLGFHC 213
              IAV +  V    C
Sbjct: 194 HFVIAVPEMKVRSQEC 209