Jatropha Genome Database
- JcCA0140001.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0140001.20 - phase: 1 /partial
(116 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01014439001 assembled CDS 168 5e-43
GSVIVT01028204001 assembled CDS 148 6e-37
GSVIVT01021406001 assembled CDS 139 2e-34
GSVIVT01030053001 assembled CDS 138 5e-34
GSVIVT01021405001 assembled CDS 138 6e-34
GSVIVT01020858001 assembled CDS 136 2e-33
GSVIVT01003201001 assembled CDS 131 5e-32
GSVIVT01003204001 assembled CDS 131 7e-32
GSVIVT01014074001 assembled CDS 120 1e-28
GSVIVT01037111001 assembled CDS 115 4e-27
GSVIVT01013450001 assembled CDS 105 4e-24
GSVIVT01019377001 assembled CDS 94 1e-20
GSVIVT01016295001 assembled CDS 86 3e-18
GSVIVT01009498001 assembled CDS 78 7e-16
GSVIVT01010483001 assembled CDS 75 7e-15
GSVIVT01015045001 assembled CDS 72 7e-14
GSVIVT01007988001 assembled CDS 69 3e-13
>GSVIVT01014439001 assembled CDS
Length = 231
Score = 168 bits (425), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 95/117 (81%), Gaps = 1/117 (0%)
Query: 1 SLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGS-FDPLGLADDPEAFAE 59
+L+HAQSILA+ QVVLMG VEG+R+ G P + +YPGG FDPLGLADDP FAE
Sbjct: 115 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAE 174
Query: 60 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 175 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 231
>GSVIVT01028204001 assembled CDS
Length = 183
Score = 148 bits (373), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/107 (71%), Positives = 79/107 (73%), Gaps = 27/107 (25%)
Query: 10 AIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGR 69
AIWACQV+LMGAVEGYR+ GGPLGEV KEIKNGR
Sbjct: 104 AIWACQVILMGAVEGYRIGGGPLGEV---------------------------KEIKNGR 136
Query: 70 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 137 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 183
>GSVIVT01021406001 assembled CDS
Length = 110
Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 75/103 (72%), Gaps = 27/103 (26%)
Query: 14 CQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 73
+V+LMGAVEGYR+AGGPLGEV KEIKNGRLAMF
Sbjct: 35 SEVILMGAVEGYRIAGGPLGEV---------------------------KEIKNGRLAMF 67
Query: 74 SMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
SMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 68 SMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 110
>GSVIVT01030053001 assembled CDS
Length = 172
Score = 138 bits (348), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/113 (66%), Positives = 76/113 (67%), Gaps = 31/113 (27%)
Query: 4 HAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVK 63
A ILAIWACQVVLMG VEGYRV ELKVK
Sbjct: 91 EAVCILAIWACQVVLMGFVEGYRV-------------------------------ELKVK 119
Query: 64 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
EIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct: 120 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLVDHLADPVANNAWAYATNFVPGK 172
>GSVIVT01021405001 assembled CDS
Length = 148
Score = 138 bits (347), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 75/102 (73%), Gaps = 27/102 (26%)
Query: 15 QVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 74
+V+LMGAVEGYR+AGGPLGEV KEIKNGRLAMFS
Sbjct: 74 EVILMGAVEGYRIAGGPLGEV---------------------------KEIKNGRLAMFS 106
Query: 75 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 107 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 148
>GSVIVT01020858001 assembled CDS
Length = 147
Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 74/101 (73%), Gaps = 27/101 (26%)
Query: 16 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 75
V+LMGAVEGYR+AGGPLGEV KEIKNGRLAMFSM
Sbjct: 74 VILMGAVEGYRIAGGPLGEV---------------------------KEIKNGRLAMFSM 106
Query: 76 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 107 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 147
>GSVIVT01003201001 assembled CDS
Length = 241
Score = 131 bits (330), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/116 (62%), Positives = 77/116 (66%), Gaps = 27/116 (23%)
Query: 1 SLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 60
+L+HAQSILA+ QVVLMG VEGYR+ G P L
Sbjct: 153 NLVHAQSILAVLGFQVVLMGLVEGYRINGLP---------------------------GL 185
Query: 61 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAWAYAT FVPG
Sbjct: 186 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWAYATKFVPGS 241
>GSVIVT01003204001 assembled CDS
Length = 236
Score = 131 bits (329), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/116 (62%), Positives = 77/116 (66%), Gaps = 27/116 (23%)
Query: 1 SLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 60
+L+HAQSILA+ QVVLMG VEGYR+ G P L
Sbjct: 148 NLVHAQSILAVLGFQVVLMGLVEGYRINGLP---------------------------GL 180
Query: 61 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAWAYAT FVPG
Sbjct: 181 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWAYATKFVPGS 236
>GSVIVT01014074001 assembled CDS
Length = 84
Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/93 (68%), Positives = 65/93 (69%), Gaps = 27/93 (29%)
Query: 24 GYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 83
GYR+ GGPLGEV KEIKNGRLAMFSMFGFFVQAI
Sbjct: 19 GYRIGGGPLGEV---------------------------KEIKNGRLAMFSMFGFFVQAI 51
Query: 84 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
VTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 52 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 84
>GSVIVT01037111001 assembled CDS
Length = 290
Score = 115 bits (288), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 14 CQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 73
+VVL+G E YR+ G ++ D ++PGG FDPLGLA+DP+ A LKVKEIKNGRLAMF
Sbjct: 187 AEVVLVGGAEYYRIINGL--DLEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMF 244
Query: 74 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 245 AMLGFFIQAYVTGEGPVENLAAHLSDPFGNN 275
>GSVIVT01013450001 assembled CDS
Length = 331
Score = 105 bits (262), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 71/107 (66%), Gaps = 7/107 (6%)
Query: 5 AQSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 57
+Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 217 SQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPVAF 276
Query: 58 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHLADP +NN
Sbjct: 277 EELKVKEIKNGRLAMVAWLGFYIQAAATGKGPVQNLLDHLADPFHNN 323
>GSVIVT01019377001 assembled CDS
Length = 209
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 32 LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 90
LG DP YPGG F+PLG D ++ +LK+KE+KNGRLAM ++ G+F Q VTG GPL
Sbjct: 127 LGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFAQGPVTGVGPL 186
Query: 91 ENLADHLADPVNNN 104
+NL DHLADPVNNN
Sbjct: 187 QNLLDHLADPVNNN 200
>GSVIVT01016295001 assembled CDS
Length = 201
Score = 86.3 bits (212), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 40 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 98
YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLA
Sbjct: 124 YPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLA 183
Query: 99 DPVNNN 104
DP +NN
Sbjct: 184 DPWHNN 189
>GSVIVT01009498001 assembled CDS
Length = 264
Score = 78.2 bits (191), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 64/111 (57%), Gaps = 17/111 (15%)
Query: 7 SILAIWACQVVLMGAVEGYRV-----------AGGPLG-----EVTDPIYPGGSF-DPLG 49
S A++ Q++LMG VE R G G E +P YPGG +PLG
Sbjct: 141 STEALFIVQLILMGFVETKRYMDFTNPGSQAKEGSFFGLEAALEGLEPGYPGGPLLNPLG 200
Query: 50 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 100
LA D + + K+KEIKNGRLAM +M G FVQA VT GP+ENL +HL++P
Sbjct: 201 LARDIKNAHDWKLKEIKNGRLAMVAMLGVFVQASVTHAGPIENLVEHLSNP 251
>GSVIVT01010483001 assembled CDS
Length = 271
Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 58/102 (56%), Gaps = 16/102 (15%)
Query: 15 QVVLMGAVEGYRVAG--GPLGEVTDPI------------YPGG-SFDPLGLAD-DPEAFA 58
+++ +G EG R A P TDPI YPGG FDPLG P+
Sbjct: 158 EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIK 217
Query: 59 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 100
EL+ KEIKNGRLAM ++ G + QAI TG GP++NL HLADP
Sbjct: 218 ELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADP 259
>GSVIVT01015045001 assembled CDS
Length = 259
Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 62/113 (54%), Gaps = 16/113 (14%)
Query: 15 QVVLMGAVEGYRVA-----GGPLGEVTDPI---------YPGG-SFDPLGLAD-DPEAFA 58
Q+ LMG VEG R A G ++T P YPGG FDP PE
Sbjct: 146 QLALMGWVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVM 205
Query: 59 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 111
L+ KEIKNGRLAM + GF QAI TG+GP+ENL H+ADP + N ++ T+
Sbjct: 206 VLRTKEIKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTS 258
>GSVIVT01007988001 assembled CDS
Length = 249
Score = 69.3 bits (168), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 40 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 99
YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP +NL H++D
Sbjct: 181 YPGGIFNPLNFAPTEEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISD 236
Query: 100 PVNNN 104
P +N
Sbjct: 237 PWHNT 241