Jatropha Genome Database

JcCA0140001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140001.10 + phase: 0 /partial
         (268 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021404001 assembled CDS                                       461   e-130
GSVIVT01032233001 assembled CDS                                       254   4e-68
GSVIVT01012723001 assembled CDS                                       232   1e-61
GSVIVT01038557001 assembled CDS                                       148   3e-36
GSVIVT01011429001 assembled CDS                                       138   3e-33
GSVIVT01027437001 assembled CDS                                       129   2e-30
GSVIVT01019680001 assembled CDS                                       127   5e-30
GSVIVT01003706001 assembled CDS                                       110   7e-25
GSVIVT01004632001 assembled CDS                                        47   9e-06

>GSVIVT01021404001 assembled CDS
          Length = 1011

 Score =  461 bits (1187), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 211/257 (82%), Positives = 236/257 (91%)

Query: 1    GGRGLHSTLNFHAKKFIGILNGIDTDSWNPMTDSFLKVQYSSNDLQGKTENKLAIRRHLG 60
            GGRGLHSTLN H+KKFIGILNGIDTD+W+P TD +LK Q+++NDLQGK ENK A+R+HLG
Sbjct: 746  GGRGLHSTLNSHSKKFIGILNGIDTDAWDPATDVYLKSQFNANDLQGKAENKEALRKHLG 805

Query: 61   LSTADAKRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIAN 120
            LS AD +RPLVGCI RLVPQKG+HLIRHAIYRTLELGGQFVLLGSSPV HIQ EFEGIAN
Sbjct: 806  LSYADTRRPLVGCIARLVPQKGIHLIRHAIYRTLELGGQFVLLGSSPVPHIQVEFEGIAN 865

Query: 121  HFQNHEHIRLILKYDDSLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGL 180
            HF+  +HIRLILKYD+SL+HSIYAASDMF+IPS+FEPCGLTQMIAMRYGSIPIARKTGGL
Sbjct: 866  HFKGDDHIRLILKYDESLSHSIYAASDMFLIPSMFEPCGLTQMIAMRYGSIPIARKTGGL 925

Query: 181  NDSVFDVDDDAIPLQFRNGFTFLTPDEQGINGALERAFNYYRNNPEGWQELVQKDMNIDF 240
            NDSVFDVDDD IPLQFRNG+TFL PDEQG+NGALERAFN+Y+ N E WQ+LV+KDMNIDF
Sbjct: 926  NDSVFDVDDDTIPLQFRNGYTFLNPDEQGLNGALERAFNHYKTNKESWQKLVKKDMNIDF 985

Query: 241  SWESSASQYEDLYANSV 257
            SWESSA QYE++Y  SV
Sbjct: 986  SWESSALQYEEIYEKSV 1002


>GSVIVT01032233001 assembled CDS
          Length = 608

 Score =  254 bits (648), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 128/264 (48%), Positives = 173/264 (65%), Gaps = 13/264 (4%)

Query: 5   LHSTLNFHAKKFIGILNGIDTDSWNPMTDSFLKVQYSSNDLQGKTENKLAIRRHLGL--- 61
           L STL  +  K+ G+LNGIDT  WNP TD FL  ++++ + +GK   K  ++R LGL   
Sbjct: 343 LASTLILNRDKYYGVLNGIDTAMWNPATDVFLPSKFNARNTEGKKICKYYVQRGLGLILK 402

Query: 62  --------STADAKRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQR 113
                   +  + K PL+ CI+RLV QKG+HLI HAI +  E GGQ ++LG +    +Q 
Sbjct: 403 GTSASKLINEMENKVPLIVCISRLVAQKGLHLITHAIKQVEERGGQIIVLGKASDGRVQT 462

Query: 114 EFEGIANHFQNHEHIRLILKYDDSLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPI 173
           EFEG+AN       IR++L Y + L+H +YAA+DM ++PSI+EPCGL QMI MRYG+IPI
Sbjct: 463 EFEGLANLHNQGPSIRILLTYSEELSHMLYAAADMVLVPSIYEPCGLAQMIGMRYGAIPI 522

Query: 174 ARKTGGLNDSVFDVDDDAIPLQFRNGFTFLTPDEQGINGALERAFNYYRNNPEGWQELVQ 233
            RKTGGL D+VFD+DD  +  +  NGF F   DE  +N AL+RAF++YR  PE W   +Q
Sbjct: 523 VRKTGGLADTVFDMDDQ-LHRETANGFVFEGIDEGSLNWALDRAFSFYREKPEEWNTTIQ 581

Query: 234 KDMNIDFSWESSASQYEDLYANSV 257
           K M ID SW ++A +Y D+Y NSV
Sbjct: 582 KVMEIDNSWNNTAGKYIDIY-NSV 604


>GSVIVT01012723001 assembled CDS
          Length = 1046

 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/249 (50%), Positives = 161/249 (64%), Gaps = 9/249 (3%)

Query: 12   HAKKFIGILNGIDTDSWNPMTDSFLKVQY-SSNDLQGKTENKLAIRRHLGLSTADAKRPL 70
            H  KF GILNGID D W+P  D F+ V Y S N ++GK   K A+++ LGL  +D   PL
Sbjct: 795  HLYKFHGILNGIDLDIWDPYNDKFIPVPYISDNVVEGKRAAKEALQQRLGLKKSDF--PL 852

Query: 71   VGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIAN--HFQNHEHI 128
            VG ITRL  QKG+HLI+HAI+RTLE  GQ VLLGS+P   IQ +F  +AN  H  + +  
Sbjct: 853  VGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHGDRA 912

Query: 129  RLILKYDDSLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDVD 188
            RL L YD+ L+H IYA +D  ++PSIFEPCGLTQ+ AMRYGSIP+ RKTGGL D+VFDVD
Sbjct: 913  RLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVD 972

Query: 189  DDAIPLQFR----NGFTFLTPDEQGINGALERAFNYYRNNPEGWQELVQKDMNIDFSWES 244
             D    Q +    NGF F   D  G++ AL RA + + +  + +  L ++ M  D+SW  
Sbjct: 973  HDKERAQAQGLEPNGFNFDGADPVGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNR 1032

Query: 245  SASQYEDLY 253
             A  Y +LY
Sbjct: 1033 PALDYMELY 1041


>GSVIVT01038557001 assembled CDS
          Length = 568

 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 134/254 (52%), Gaps = 5/254 (1%)

Query: 1   GGRGLHSTLNFHAKKFIGILNGIDTDSWNPMTDSFLKVQYSSNDLQGKTENKLAIRRHLG 60
           GG GLH  L        GI NGID   W+P +D  +   YS+ DL GK + K+A+++ L 
Sbjct: 308 GGYGLHELLTSRKAVINGITNGIDVSEWDPSSDEHIPFHYSAEDLSGKVQCKIALQKELS 367

Query: 61  LSTADAKRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIAN 120
           L       PL+G I RL  QKG+ +IR A    +    Q V+LGS    + + E      
Sbjct: 368 LPIR-PDCPLIGFIGRLDYQKGIDVIRLATPELMGEDVQLVMLGS---GNPEDEEWMRVM 423

Query: 121 HFQNHEHIRLILKYDDSLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGL 180
                +  R  + ++  ++H I A+ D+ ++PS FEPCGL Q+ AMRYG++P+   TGGL
Sbjct: 424 ESTYRDKFRGWVGFNVPISHRITASCDILLMPSRFEPCGLNQLYAMRYGAVPVVHGTGGL 483

Query: 181 NDSVFDVDDDA-IPLQFRNGFTFLTPDEQGINGALERAFNYYRNNPEGWQELVQKDMNID 239
            D+V + +  A        G+TF    +  +  AL  A   YR +   W+ L+++ M  D
Sbjct: 484 RDTVENFNPYAGGGSGEGTGWTFSPLSKDTMLAALRVAIRTYREHKPSWERLMKRGMEKD 543

Query: 240 FSWESSASQYEDLY 253
           ++W+ +A +YE ++
Sbjct: 544 YTWDKAALEYEQVF 557


>GSVIVT01011429001 assembled CDS
          Length = 788

 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/258 (35%), Positives = 129/258 (50%), Gaps = 31/258 (12%)

Query: 1   GGRGLHSTLNFHAKKFIGILNGIDTDSWNPMTDSFLK----VQYSSNDLQ-GKTENKLAI 55
           GG GLH  +N +  K  GI+NGID   WNP  D +L+    V YS   L  GK + K A+
Sbjct: 548 GGWGLHQIINENDWKLRGIVNGIDVKDWNPELDIYLESDGYVNYSLETLHTGKPQCKAAL 607

Query: 56  RRHLGLSTADAKRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREF 115
           ++ LGL   +   PL+G I RL  QKGV LI  A+   +    Q V+             
Sbjct: 608 QKELGLPIRE-DVPLIGFIGRLDHQKGVDLIAEAVPWMVGQDVQLVI------------- 653

Query: 116 EGIANHFQNHEHIRLILKYDDSLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIAR 175
                  Q+H+ IR  + +   +AH I A +D+ ++PS FEPCGL Q+ AM YG+IP+  
Sbjct: 654 -------QHHDKIRGWVGFSVKMAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVH 706

Query: 176 KTGGLNDSVFDVDDDAIPLQFRN-GFTFLTPDEQGINGALERAFNYYRNNPEGWQELVQK 234
             GGL D+V   D    P      G+TF   +   +  AL      YR   + W+ L ++
Sbjct: 707 AVGGLRDTVQPFD----PYNESGLGWTFDRAEANRLIHALGNCLLTYRQYKQSWEGLQRR 762

Query: 235 DMNIDFSWESSASQYEDL 252
            M  D SW+ +A  YE++
Sbjct: 763 GMMQDLSWDHAAQNYEEV 780


>GSVIVT01027437001 assembled CDS
          Length = 614

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 130/247 (52%), Gaps = 28/247 (11%)

Query: 18  GILNGIDTDSWNPMTDSFLKVQYSSNDL-QGKTENKLAIRRHLGLSTADAKRPLVGCITR 76
           GI+NG+D   WNP+TD ++ ++Y ++ + + K   K A++   GL   D   P++G I R
Sbjct: 355 GIINGMDVQEWNPLTDKYISIKYDASTVKEAKLLLKEALQAEAGLPV-DRNIPVIGFIGR 413

Query: 77  LVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIANHFQNHEHIRLILKYDD 136
           L  QKG  ++  AI + +    Q ++LG+     ++++ E +   + ++   R + K++ 
Sbjct: 414 LEEQKGSDILVAAIPQFVTANVQIIVLGTGK-KPMEKQLEQLEKKYPDNA--RGVAKFNV 470

Query: 137 SLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSV-----------F 185
            LAH I A +D  ++PS FEPCGL Q+ AMRYG++PI   TGGL D+V           F
Sbjct: 471 PLAHMIIAGADFLLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKEGFTGFQMGSF 530

Query: 186 DVDDDAIPLQFRNGFTFLTPDEQGINGALERAFNYYRNNPEGWQELVQKDMNIDFSWESS 245
            V+ DA+             D   +  +++RA   Y        E+VQ  M  D SW+  
Sbjct: 531 SVECDAVD----------PADATAVATSVKRALATY--GTPALTEMVQNCMAQDLSWKGP 578

Query: 246 ASQYEDL 252
           A ++E++
Sbjct: 579 AKKWEEV 585


>GSVIVT01019680001 assembled CDS
          Length = 659

 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 128/247 (51%), Gaps = 28/247 (11%)

Query: 18  GILNGIDTDSWNPMTDSFLKVQYSSND-LQGKTENKLAIRRHLGLSTADAKRPLVGCITR 76
           GI+NG+D   WNP TD  + + Y++   +  K   K A++  +GL   D   PL+G I R
Sbjct: 400 GIVNGMDVQEWNPSTDKHIGIHYNATTVMDAKALLKEALQAEVGLPV-DRNIPLIGFIGR 458

Query: 77  LVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIANHFQNHEHIRLILKYDD 136
           L  QKG  ++  AI + ++   Q V+LG+   A ++++ E +   + N      + K++ 
Sbjct: 459 LEEQKGSDILAAAIPKFIDEDVQIVVLGTGKKA-MEKQIEQLEIKYPNKAI--GVAKFNV 515

Query: 137 SLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSV-----------F 185
           SLAH I A +D  +IPS FEPCGL Q+ AMRYG++PI   TGGL D+V           F
Sbjct: 516 SLAHMITAGADFMLIPSRFEPCGLIQLHAMRYGTVPICAATGGLVDTVKEGFTGFHMGPF 575

Query: 186 DVDDDAIPLQFRNGFTFLTPDEQGINGALERAFNYYRNNPEGWQELVQKDMNIDFSWESS 245
           +V+ D I             D   +   ++RA   Y     G  E++Q  M +D SW+  
Sbjct: 576 NVECDRID----------PADVDAVAITVKRALATYGTAALG--EMIQNCMALDLSWKGP 623

Query: 246 ASQYEDL 252
           +  +E+L
Sbjct: 624 SKNWEEL 630


>GSVIVT01003706001 assembled CDS
          Length = 769

 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 118/246 (47%), Gaps = 14/246 (5%)

Query: 4   GLHSTLNFHAKKFIGILNGIDTDSWNPMTDSFLKVQYSSNDLQGKTENKLAIRRHLGLST 63
           GL ST   H  K +    G D  +W+P  D FL   Y++++++GK   K+A+++HLGL T
Sbjct: 521 GLESTFTIHKDKLLIAPYGFDKFTWDPSRDKFLPENYTADNMKGKAVCKVALQQHLGL-T 579

Query: 64  ADAKRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIANHFQ 123
             A   LVGCI   V    V  ++  +        QFV    S V       +      +
Sbjct: 580 EHASVILVGCIFSEVSDVDVENLKEVVLIASRRDVQFVFTRLSKVPSKNTSLDSFLEEIK 639

Query: 124 NHEHIRLILKYDDSLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIA-RKTGGLND 182
           + E++R I K D++L+H I+A SD+ + PS  +P     + AMRYG+ PIA    G    
Sbjct: 640 D-ENVRFIDKCDEALSHLIFAGSDIILCPSFHDPMLQVPLKAMRYGAAPIAITSIGKRFR 698

Query: 183 SVFDVDDDAIPL-QFRN-GFTFLTPDEQGINGALERAFNYYRNNPEGWQELVQKDMNIDF 240
            V D D  +  L QF N  F +++ +E         A +  ++N   W + +   M  DF
Sbjct: 699 HVVDHDFQSTKLSQFLNTTFAYMSLNE---------ALDEIKSNSMQWNQKIMDAMTKDF 749

Query: 241 SWESSA 246
           SW++  
Sbjct: 750 SWDAEC 755


>GSVIVT01004632001 assembled CDS
          Length = 83

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 180 LNDSVFDVDDDAIPLQFR----NGFTFLTPDEQGINGALERAFNYYRNNPEGWQELVQKD 235
           L D+VFDVD D    Q +    NGF F   D  G++ AL RA + + +  + +  L ++ 
Sbjct: 1   LYDTVFDVDHDKERAQAQGLEPNGFNFDGADSVGVDYALNRAISAWYDGRDWFNSLCKQV 60

Query: 236 MNIDFSWESSASQYEDLY 253
           M  D+SW   A  Y +LY
Sbjct: 61  MEQDWSWNRPALDYMELY 78