Jatropha Genome Database

JcCA0139851.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139851.20 + phase: 2 /TE/partial
         (889 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014104001 assembled CDS                                       209   7e-54
GSVIVT01028612001 assembled CDS                                       206   5e-53
GSVIVT01034745001 assembled CDS                                       192   4e-49
GSVIVT01017026001 assembled CDS                                       155   1e-37
GSVIVT01022096001 assembled CDS                                        90   4e-18
GSVIVT01024357001 assembled CDS                                        52   1e-06
GSVIVT01037631001 assembled CDS                                        50   4e-06
GSVIVT01017188001 assembled CDS                                        50   7e-06

>GSVIVT01014104001 assembled CDS
          Length = 1354

 Score =  209 bits (531), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 111/294 (37%), Positives = 170/294 (57%), Gaps = 28/294 (9%)

Query: 253  HVPDMHSNLISVGRLDAENFCSAFRNGQWKLTKGSMVVANGRKDPKLY------------ 300
            +VP +  NL+S+ +LDA  +   F +GQ  L   S+ + +G     LY            
Sbjct: 726  YVPSISRNLVSLSKLDATGYSVLFSSGQLSLMLNSVTIGSGILCDGLYKISLNHEFAQAL 785

Query: 301  -VMHAKLARDTLNVAEDDSAVELWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCM 359
              +H+ +      + E+ S   LWH+RLGH+S + +  LVK  +L  LD      C +C+
Sbjct: 786  ITLHSNVGSKRGLINENSSI--LWHRRLGHISRERIERLVKEGILQNLDFTDFHVCVNCI 843

Query: 360  ARKQNRVAFKISQPSKMKNVLDLVHSDLCGPLTMS-YGGNRYFVTFIDDHSRKTWVYTLK 418
              KQ +   K +  ++   +L+++H+D+CGPL++  + G +YF+TFIDD SR  +VY + 
Sbjct: 844  KGKQTKHTKKGA--TRSNELLEIIHTDICGPLSIPCFTGEKYFITFIDDLSRYGYVYLMH 901

Query: 419  SKDQVLDVFKQFLNLVERQTGKKLRCIKTDNGGEY----------TGPFDAFCKXHGIRH 468
             K Q +D+F+ F+  VERQ  KK++ +++D GGEY           GPF  F + HGIR 
Sbjct: 902  EKSQAIDIFEMFITEVERQLDKKIKIVRSDQGGEYYGRYDESGQNPGPFAKFLEKHGIRA 961

Query: 469  QTTPPKTPQLNGLAERMNRTLMERVRCLLSHAKLFKRFWGEALLTAVHLINRSP 522
            Q T P TPQ NG+AER NRTLME VR ++S++ +    WGEAL TA++++NR P
Sbjct: 962  QYTMPGTPQQNGVAERRNRTLMEMVRSMMSYSSVPISLWGEALKTAMYILNRVP 1015


>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score =  206 bits (524), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/283 (38%), Positives = 168/283 (59%), Gaps = 10/283 (3%)

Query: 253 HVPDMHSNLISVGRLDAENFCSAFRNGQWKL--TKGSMVVANGRKDPKLYVMHA---KLA 307
           +VP++ +NL+S+G+L  +     F++G+ K+  ++  +++       ++++++A    ++
Sbjct: 380 YVPELKNNLLSIGQLQEKGLTILFQHGKCKVFHSQKGLIMDTKMSSNRMFMLYALSQPIS 439

Query: 308 RDTLNVAEDDSAVELWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEK--CSDCMARKQNR 365
               N   +D  ++LWH R GH+S +G+ TL +  M++GL +       C DC+  KQ+R
Sbjct: 440 STCFNTVTED-ILQLWHCRYGHLSFQGLKTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHR 498

Query: 366 VAFKISQPSKMKNVLDLVHSDLCGPLT-MSYGGNRYFVTFIDDHSRKTWVYTLKSKDQVL 424
            +       +   +L LVH+D+CGP+  +S    RY +TF DD SRKTWVY L  K +  
Sbjct: 499 SSIPKKSNWRAAEILQLVHADICGPINPISNSKKRYLLTFTDDFSRKTWVYFLVEKSEAF 558

Query: 425 DVFKQFLNLVERQTGKKLRCIKTDNGGEYTG-PFDAFCKXHGIRHQTTPPKTPQLNGLAE 483
            VFK F   VE++T   LRC++TD GGE+T   F  FC  HGIR Q T   TPQ NG+AE
Sbjct: 559 AVFKSFKTYVEKETSSFLRCLRTDRGGEFTSQEFAIFCDVHGIRRQLTAAYTPQQNGVAE 618

Query: 484 RMNRTLMERVRCLLSHAKLFKRFWGEALLTAVHLINRSPCVPL 526
           R NRT+M  VR +LS  KL K FW EA+   VH++NRSP   +
Sbjct: 619 RKNRTIMNMVRSMLSAKKLPKTFWPEAVNWTVHVLNRSPTFAV 661


>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score =  192 bits (489), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 109/285 (38%), Positives = 162/285 (56%), Gaps = 22/285 (7%)

Query: 252 VHVPDMHSNLISVGRLDAENFCSAFRNGQWKLTKGS---MVVANGRKDPKL------YVM 302
           +++PD+  NL+SV ++         RNG     KG+   +   +G++  K+      + +
Sbjct: 394 LYIPDLDQNLLSVAQM--------LRNGYAVFFKGNFCFITNVHGKEIAKIKMNGNNFYL 445

Query: 303 HAKLARDTLNVAEDDSAVELWHKRLGHMSEKGMTTLVKNNMLSGLDK--VHLEKCSDCMA 360
              L    +  A+ D +V +WHKR GH + K +  + +  M+  + +  V+ + C  C  
Sbjct: 446 KLDLVEGHVFSAKIDESV-VWHKRYGHFNLKSLRFMQEAGMVEDMPEISVNAQTCESCEL 504

Query: 361 RKQNRVAFKISQPSKMKNVLDLVHSDLCGPL-TMSYGGNRYFVTFIDDHSRKTWVYTLKS 419
            KQ R  F  +   K  + L+L++SD+CGP+ T S   N YF  FIDD SR TWVY LK+
Sbjct: 505 GKQQRQPFPQNMSKKATHKLELINSDICGPMSTASLSNNVYFALFIDDLSRMTWVYFLKT 564

Query: 420 KDQVLDVFKQFLNLVERQTGKKLRCIKTDNGGEYTG-PFDAFCKXHGIRHQTTPPKTPQL 478
           K QVL VFK F  +VE Q+G+ ++ ++TDNGGEY     + FC+  GI HQ   P +PQ 
Sbjct: 565 KSQVLSVFKSFKKMVETQSGQNVKVLRTDNGGEYISKELNVFCQEAGIVHQLIAPYSPQQ 624

Query: 479 NGLAERMNRTLMERVRCLLSHAKLFKRFWGEALLTAVHLINRSPC 523
           NG+ ER NRT+ME  RC+L   KL K  W EA+ T+V+L+NR P 
Sbjct: 625 NGVFERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPT 669


>GSVIVT01017026001 assembled CDS
          Length = 1273

 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/283 (36%), Positives = 156/283 (55%), Gaps = 12/283 (4%)

Query: 254  VPDMHSNLISVGRLDAENFCSA-FRNGQWKLT--KGSMVVANGRKDPKLYVMHAKLARDT 310
            VP +  NL+S+ +L ++   S  F N  + +   +   VVA G++D  LYV+  +     
Sbjct: 932  VPHLIKNLLSISKLTSDFPLSVTFTNNLFTVQNRQTGRVVATGKRDGGLYVLE-RGNSAF 990

Query: 311  LNVAEDDS---AVELWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEK-CSDCMARKQNRV 366
            ++V ++ S   + +LWH RLGH++   ++ L K   LS +  +     CS C   K +R+
Sbjct: 991  ISVLKNKSLRASYDLWHARLGHVNYFVISFLHKKGHLSLMSLLPSPSLCSTCQLAKNHRL 1050

Query: 367  AFKISQPSKMKNVLDLVHSDLCGPLTM-SYGGNRYFVTFIDDHSRKTWVYTLKSKDQVLD 425
             +  ++  +  +VLDL+H DL GP  + S  G  Y+V FIDD+SR TW+Y LK K    D
Sbjct: 1051 PYSRNE-HRSSHVLDLIHCDLPGPSPIKSNSGFLYYVIFIDDYSRFTWLYPLKFKSDFFD 1109

Query: 426  VFKQFLNLVERQTGKKLRCIKTDNGGEYTGP-FDAFCKXHGIRHQTTPPKTPQLNGLAER 484
            +F QF   VE Q   +++  ++D G E+T   F A  +  GI HQ + P TP  NG AER
Sbjct: 1110 IFLQFKKFVENQHFARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTPAQNGRAER 1169

Query: 485  MNRTLMERVRCLLSHAKLFKRFWGEALLTAVHLINRSPCVPLI 527
             +R + E    LL H+ L  RFW +A  TA ++INR P  PL+
Sbjct: 1170 KHRHVTETGLTLLFHSHLSPRFWVDAFSTATYIINRLP-TPLL 1211


>GSVIVT01022096001 assembled CDS
          Length = 390

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 19/248 (7%)

Query: 254 VPDMHSNLISVGR------LDAENFCSAFRNGQWKLTKGSMVVANGRKDP--KLYVMHAK 305
           VP M  NLI V +      +  E F  +F      L  G+ ++ +  KD   K   +H K
Sbjct: 33  VPSMKHNLIYVSQFFLTNNVSIEFFPRSFLMKD--LRTGATLLIDNSKDGVYKWLTIHEK 90

Query: 306 LARDTLNVAEDDSAVELWHKRLGHMSEKGMTTLVKNNMLS-GLDKVHLEKCSDCMARKQN 364
            ++  L  A   ++   WH  LGH S K ++ L+ + ++      +     + C   K +
Sbjct: 91  -SKPLLIFASIKASTSNWHHHLGHPSTKVLSHLMSSQLIHLSFTSIRNFSYNSCHCNKSH 149

Query: 365 RVAFKISQPSKMKNVLDLVHSDL-CGPLTMSYGGNRYFVTFIDDHSRKTWVYTLKSKDQV 423
           ++ F  S P+   + L L++SD+ C P+  S+  N+Y+V FID  ++  W Y       V
Sbjct: 150 KLHFFASSPTSTSS-LQLLYSDVWCSPVE-SFNDNKYYVIFIDHFTKYIWFYL---NYDV 204

Query: 424 LDVFKQFLNLVERQTGKKLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAE 483
           LD+F  F  LVE++  K++  + T+N  E     + F   HG+ H TT   TP+ NG +E
Sbjct: 205 LDIFIHFKLLVEKKFNKQIIHLYTNNCEECLA-LNFFLAHHGVSHFTTHSHTPEHNGYSE 263

Query: 484 RMNRTLME 491
             +R L+E
Sbjct: 264 CRHRELLE 271


>GSVIVT01024357001 assembled CDS
          Length = 851

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 34/53 (64%)

Query: 475 TPQLNGLAERMNRTLMERVRCLLSHAKLFKRFWGEALLTAVHLINRSPCVPLI 527
           TPQ NG+ ER N+T+ME  + +L    L K FW EA+ T V+L+NR P   L+
Sbjct: 515 TPQQNGVVERKNQTVMEMAKAMLYEKGLPKFFWVEAVNTVVYLLNRCPTKALL 567


>GSVIVT01037631001 assembled CDS
          Length = 1940

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 19/183 (10%)

Query: 252  VHVPDMHSNLISVGRLDAENFCSAF--RNGQWKLTKGSMVVANGRKDPKLYVMHAKLARD 309
            + VPD+  NL+SVG+L  + F   F  RN   K  +G  V  N +   K + ++  L  +
Sbjct: 1093 LFVPDIDQNLLSVGQLVEKEFKVYFEDRNCIIKDAEGKEVF-NIKMKGKSFALNL-LEDE 1150

Query: 310  TLNVAEDDSAVELWHKRLGHMSEKGMTTLVKNNMLSGLDKVH--LEKCSDCMARKQNRVA 367
               + + DS    W +R+ H     +  + KN ++ GL  +   L  C+ C   KQ ++ 
Sbjct: 1151 HTAILQQDSTTMFWDRRVEHFHHDDVLYMKKNQIVEGLPDLEKDLPICATCQYGKQTKLP 1210

Query: 368  F--KISQPSKMKNVLDLVHSDLCGPLTMSYGGNRYFVTFIDDHSR-KTWVYTLKSKDQVL 424
            F  KIS  +  K  L LVH+D+           R  ++  DDH + K+    LK + ++L
Sbjct: 1211 FPKKISWRATQK--LQLVHTDVVKA--------RVKISKQDDHEKTKSLCERLKMEKRIL 1260

Query: 425  DVF 427
             + 
Sbjct: 1261 IIL 1263


>GSVIVT01017188001 assembled CDS
          Length = 1646

 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 15/110 (13%)

Query: 322 LWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMARKQNRVAFKISQPSKMKNVLD 381
           LWH RLGH     +  L    +L  L  V++EK ++          F    P K  N+LD
Sbjct: 49  LWHARLGHPVANILKLLKPIILLYVL-LVNMEKATNY--------HFHFLSPIKASNILD 99

Query: 382 LVHSDLCGPLTMSYG-GNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQF 430
           L+H++L GP  +    G RYF+ F+DD SR +     +    V  VF  F
Sbjct: 100 LIHTNLWGPSPIPASIGARYFLLFVDDCSRFS-----RPSSSVFLVFNSF 144