Jatropha Genome Database

JcCA0139851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139851.10 + phase: 0 
         (188 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027929001 assembled CDS                                       139   8e-34
GSVIVT01027930001 assembled CDS                                       121   2e-28

>GSVIVT01027929001 assembled CDS
          Length = 199

 Score =  139 bits (350), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 110/203 (54%), Gaps = 19/203 (9%)

Query: 1   MEEISETAKAYYANLSEKQKRLAKDFFNEMDKDGDGKITFDEYEQRIKPKKGFNPIASSD 60
           MEEI E A AYY   +++QK+LA  FF  +D DGDG ++  E+   ++  +G+    + +
Sbjct: 1   MEEIREAALAYYEAGTQEQKQLAWAFFQTLDVDGDGTVSVQEFVNFLR-GRGYRLFDNPN 59

Query: 61  FFRKLDKDGNGTLDFDEFVTLHYICATRRVFYCDECRVFLDRVYFTCVQCFNGSGNTYDL 120
           F+R LD+DGNG LDF E +T  YI  + R F CD C +FL  ++FTC+ C+  S  T+DL
Sbjct: 60  FYRALDRDGNGCLDFHEVLTFFYIIKSGRPF-CDGCGIFLKGLFFTCLNCYESSHTTFDL 118

Query: 121 CVSCYRDKNIINHHKDAVFLDNYTMLHAKR---------------NQNNASASKGKKRVQ 165
           C +CYR K     H+ A  LDNYT+L  KR                   +S+ K  K   
Sbjct: 119 CSACYRGKRF--SHQHAAILDNYTLLTHKRMMTMAGYGQPNMSQPTSRGSSSLKQGKSSH 176

Query: 166 ETVELAKLGIETASNVVNLCNQM 188
           E V++A     T   + N C+ M
Sbjct: 177 EKVKVAFEAFNTGVAIANACSTM 199


>GSVIVT01027930001 assembled CDS
          Length = 457

 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 99/165 (60%), Gaps = 4/165 (2%)

Query: 4   ISETAKAYYANLSEKQKRLAKDFFNEMDKDGDGKITFDEYEQRIKPKKGFNPIASSDFFR 63
           + E A AYY   +E  K+LA DFFN MD +GD ++   EY      K+G+  +++ ++FR
Sbjct: 1   MREVADAYYKAGAEDIKQLAHDFFNSMDLNGDRRVILREY-LAFTEKRGYIRMSNQEWFR 59

Query: 64  KLDKDGNGTLDFDEFVTLHYICATRRVFYCDECRVFLDRVYFTCVQCFNGSGNTYDLCVS 123
           KLDKD  G+L F + +TL YI  + R F C  C  F+  V+FTCV+CF+ S + + +C+ 
Sbjct: 60  KLDKDRKGSLGFHDVMTLCYIVKSGRPF-CKGCGEFMSGVFFTCVKCFDHSPSCFSVCLQ 118

Query: 124 CYRDKNIINHHKDAVFLDNYTMLHAKRNQNNASASKGKKRVQETV 168
           CY   NI + HK+  FLDN+ +L AKR ++   A +      +T+
Sbjct: 119 CYESNNIEHEHKE--FLDNFALLEAKRRKSQFPALRATAAQVQTL 161



 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 16/188 (8%)

Query: 1   MEEISETAKAYYANLSE--KQKRLAKDFFNEMDKDGDGKITFDEYEQRIKPKKGFNPIA- 57
           M+E+ + A AY  + SE  K+K   + FF+ M      ++   E+ + ++ +K +  +  
Sbjct: 173 MKELRQIATAYCRSTSEDIKEKEKIRKFFSSMHYGNHERVALHEFLEFMR-RKAYKHLTN 231

Query: 58  ---------SSDFFRKLDKDGNGTLDFDEFVTLHYICATRRVFYCDECRVFLDRVYFTCV 108
                    + +FFRKLDKD  G L+F +  TL+YI  + R F C  C  F++ ++FTCV
Sbjct: 232 NNLDLEFMNTPEFFRKLDKDKKG-LNFSDVKTLYYIIQSGRPF-CKGCGEFIEGMFFTCV 289

Query: 109 QCFNGSGNTYDLCVSCYRDKNIINHHKDAVFLDNYTMLHAKRNQN-NASASKGKKRVQET 167
            CF      + LC+ CY  +  I+     +FLDNY +L A R     A+  K   +V ++
Sbjct: 290 SCFERGSTCFSLCLHCYNAQKFIHSATHHLFLDNYALLEAMRETAWKANRPKTHVKVNDS 349

Query: 168 VELAKLGI 175
            + A L +
Sbjct: 350 KQSASLAM 357