Jatropha Genome Database

JcCA0139141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139141.10 - phase: 0 
         (363 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032155001 assembled CDS                                       267   5e-72
GSVIVT01008737001 assembled CDS                                       259   1e-69
GSVIVT01033285001 assembled CDS                                       248   4e-66
GSVIVT01023969001 assembled CDS                                       163   1e-40
GSVIVT01024322001 assembled CDS                                        87   2e-17
GSVIVT01008429001 assembled CDS                                        60   2e-09
GSVIVT01011715001 assembled CDS                                        56   3e-08
GSVIVT01011713001 assembled CDS                                        56   3e-08
GSVIVT01009017001 assembled CDS                                        52   6e-07

>GSVIVT01032155001 assembled CDS
          Length = 421

 Score =  267 bits (683), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 137/331 (41%), Positives = 190/331 (57%), Gaps = 14/331 (4%)

Query: 39  GGSIAAEKVQ---DKYNQYWSFFRSPKQIKTVEEVPAFVDTFYNLVTDIYEWGWGQSFHF 95
           GG I  ++V    +KY +Y   +   ++ +        V+ +Y+LVT  YE+GWG+SFHF
Sbjct: 82  GGKIQKDEVLSAVEKYEKYHVCYGGEEEERKAN-YSDMVNKYYDLVTSFYEFGWGESFHF 140

Query: 96  SPSIPGKSHRDATRLHEEFAVDLLNVKPGDKILDAGCGVGGPMRAIAKHSGANVVGITIN 155
           +P   G+S R++ R HE F    L VKPG K+LD GCG+GGP+R IA+ S  +V G+  N
Sbjct: 141 APRWKGESLRESIRRHEHFLALQLGVKPGQKVLDVGCGIGGPLREIARFSSTSVTGLNNN 200

Query: 156 QYQVDRAKLHNKKAGLDKQCDVVCGNFLKMPFDDNSFDGAYSVEATCHAPKLEEVYGEIY 215
           +YQ+ R +  N  AG+DK CD V  +F+KMPF DN+FD  Y++EATCHAP     Y EIY
Sbjct: 201 EYQITRGRELNCIAGVDKTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDALGCYKEIY 260

Query: 216 RVLKPGSFYISYEWVTTDLYKSEDPTHVEIIQGIERGDALPGLRSYSDIAENAKKVGFEV 275
           RVLKPG  + +YEW  TD +   +  H +I   IE GD LP +R      E  K+ GFEV
Sbjct: 261 RVLKPGQCFAAYEWCMTDAFDPNNQEHQKIKAEIEIGDGLPDIRLTRQCLEALKQAGFEV 320

Query: 276 VREKDLAKPPACPWW----------SRLKMGRIAYWRNHILITVLGWIGIAPKGVVDVHE 325
           + EKDLA     PW+          S  ++  +  +    ++  L ++G+APKG   V  
Sbjct: 321 IWEKDLAVGSPLPWYLPLDKSHFSLSSFRLTAVGRFITKNMVKALEFVGLAPKGSQRVQA 380

Query: 326 MLYDTAHYLTQGGETGIFTPMHMILCKKPES 356
            L   A  L  GG+  IFTPM+  L +KP S
Sbjct: 381 FLEKAAEGLVDGGKKEIFTPMYFFLARKPNS 411


>GSVIVT01008737001 assembled CDS
          Length = 281

 Score =  259 bits (662), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 118/153 (77%), Positives = 135/153 (88%), Gaps = 5/153 (3%)

Query: 63  QIKTVEEVPAFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEFAVDLLNVK 122
           +I+T E+VP FVDTFYNLVTDIYEWGWGQSFHFSP++PGKSHRDATRLHEE AVDL++VK
Sbjct: 67  EIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPAVPGKSHRDATRLHEEMAVDLIDVK 126

Query: 123 PGDKILDAGCGVGGPMRAIAKHSGANVVGITINQYQVDRAKLHNKKAGLDKQCDVVCGNF 182
           PGD+ILD GCGVGGPMRAIA HS ANVVGITIN+YQV+RA+LHN+KAGLD  C+VVCGNF
Sbjct: 127 PGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNRKAGLDSLCEVVCGNF 186

Query: 183 LKMPFDDNSFDGAYSVEAT-----CHAPKLEEV 210
           L+MPF DNSFDGAYS+EAT     CH+   E +
Sbjct: 187 LQMPFADNSFDGAYSIEATSRTRGCHSRHRERI 219



 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 54/61 (88%)

Query: 297 RIAYWRNHILITVLGWIGIAPKGVVDVHEMLYDTAHYLTQGGETGIFTPMHMILCKKPES 356
           RIAYWRNHILI +   +GIAPKG VDVHEML+ TA YLT+GGE+GIFTPMHMILC+KPES
Sbjct: 218 RIAYWRNHILIMIFAALGIAPKGTVDVHEMLFKTADYLTRGGESGIFTPMHMILCRKPES 277

Query: 357 S 357
           S
Sbjct: 278 S 278


>GSVIVT01033285001 assembled CDS
          Length = 343

 Score =  248 bits (632), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 116/293 (39%), Positives = 171/293 (58%), Gaps = 10/293 (3%)

Query: 74  VDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEFAVDLLNVKPGDKILDAGCG 133
           V+ +Y+L T  YE+GWG+SFHF+    G+S R++ + HE F    L +K G K+LD GCG
Sbjct: 51  VNKYYDLATSFYEYGWGESFHFASRWKGESLRESIKRHEHFLAVQLGLKCGQKVLDVGCG 110

Query: 134 VGGPMRAIAKHSGANVVGITINQYQVDRAKLHNKKAGLDKQCDVVCGNFLKMPFDDNSFD 193
           +GGP+R IA+ S  ++ G+  N+YQ+ R K  N+ AG+DK C+    +F+KMPF +++FD
Sbjct: 111 IGGPLREIARFSDTSITGLNNNEYQITRGKELNRLAGVDKTCNFELADFMKMPFSNDTFD 170

Query: 194 GAYSVEATCHAPKLEEVYGEIYRVLKPGSFYISYEWVTTDLYKSEDPTHVEIIQGIERGD 253
             +++EATCHAP + + Y EIYRVLKPG  + +YEW  TD +   +  H  I   +E G+
Sbjct: 171 AVFAIEATCHAPDVLDCYKEIYRVLKPGQCFAAYEWCITDCFDPMNREHQRIKGEVELGN 230

Query: 254 ALPGLRSYSDIAENAKKVGFEVVREKDLAKPPACPWW----------SRLKMGRIAYWRN 303
            LP +RS     E  K  GFEV+ EKD+A     PW+          S  +      +  
Sbjct: 231 GLPDIRSVGQCLEALKLAGFEVLWEKDVAADSPLPWYLPLDTTQFSLSNFRTTSFGRFIT 290

Query: 304 HILITVLGWIGIAPKGVVDVHEMLYDTAHYLTQGGETGIFTPMHMILCKKPES 356
             ++  L ++ +AP+G   V   L   A  L +GG  GIFTPM+  + +KP S
Sbjct: 291 RNMVKALEFVRLAPEGSQRVQAFLEKAAEALVEGGREGIFTPMYFFVARKPRS 343


>GSVIVT01023969001 assembled CDS
          Length = 183

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 73/86 (84%), Positives = 81/86 (94%)

Query: 144 HSGANVVGITINQYQVDRAKLHNKKAGLDKQCDVVCGNFLKMPFDDNSFDGAYSVEATCH 203
           HSGANVVGITIN+YQV+RA LHNKKAGL+ QC+VVCGNFL+MPF DNSFDGAYS+EATCH
Sbjct: 74  HSGANVVGITINEYQVNRAHLHNKKAGLESQCEVVCGNFLEMPFPDNSFDGAYSIEATCH 133

Query: 204 APKLEEVYGEIYRVLKPGSFYISYEW 229
           APKLEEVY EI+RVLKPGS Y+SYEW
Sbjct: 134 APKLEEVYSEIFRVLKPGSMYVSYEW 159



 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 1  MDSLTLFLTLSVPFIGLYWFLCILGSAEQKGKHASQLSGGSIAAEKVQDKYNQY 54
          MDSL LF T S+   G+YWF+ +LG+AE+KGK A  LSGGSI+ +KV+D Y QY
Sbjct: 1  MDSLALFCTASLVAGGVYWFVFLLGAAERKGKRAVHLSGGSISGDKVRDNYKQY 54


>GSVIVT01024322001 assembled CDS
          Length = 263

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 16/233 (6%)

Query: 126 KILDAGCGVGGPMRAIAKHSGANVVGITINQYQVDRAKLHNKKAGLDKQCDVVCGNFLKM 185
           +++D GCG+GG  R +AK  GA+  GIT++  Q  RA+      GL  +      + L  
Sbjct: 44  RVVDVGCGIGGSSRYLAKKYGASCQGITLSPLQAQRAQTLAASQGLADKVSFQVADALDQ 103

Query: 186 PFDDNSFDGAYSVEATCHAPKLEEVYGEIYRVLKPGSFYISYEWVTTDLYKSED---PTH 242
           PF D  FD  +S+E+  H P  ++   E+ RV+ PG   I   W   DL  SE+   P  
Sbjct: 104 PFPDGQFDLVWSMESGEHMPDKKKFVSELARVVAPGGTIILVTWCHRDLSPSEESLKPEE 163

Query: 243 VEIIQGIERGDALPGLRSYSDIAENAKKVGFEVVREKDLAKPPACPWWSRLKMGRIAYWR 302
             ++  I     LP   S +D  +  + +  + ++  D ++  A P+W  +    + + +
Sbjct: 164 KALLDKICSAYYLPDWCSTTDYVKLLESLSLQDIKAADWSEYVA-PFWPAVIRSALTF-K 221

Query: 303 NHILITVLGWIGIAPKGVVDVHEMLYDTAHYLTQGGETGIFTPMHMILCKKPE 355
             I +   GW  I  +G + +  M+        +G + G+     +I C+KPE
Sbjct: 222 GFISLLRSGWKTI--RGALVMPLMI--------RGYKMGLIK-FAIITCRKPE 263


>GSVIVT01008429001 assembled CDS
          Length = 491

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 119 LNVKPGDKILDAGCGVGGPMRAIAKHSGANVVGITINQYQVDRAKLHNKKAGLDKQCDVV 178
           L++KPG K+LD GCG+GG    +A++    VVGI ++   V  A    +  GL    +  
Sbjct: 278 LDLKPGQKVLDVGCGIGGGDFYMAENFDVEVVGIDLSINMVSFA--LERAIGLKCSVEFE 335

Query: 179 CGNFLKMPFDDNSFDGAYSVEATCHAPKLEEVYGEIYRVLKPGSFYISYEWVTTDLYKSE 238
             +  K  + DN+FD  YS +   H      ++   ++ LKPG      + + +D  K  
Sbjct: 336 VADCTKKSYPDNTFDVIYSRDTILHIQDKPALFKSFFKWLKPGG-----KVLISDYCKRA 390

Query: 239 DPTHVEIIQGI-ERGDALPGLRSYSDIAENAKKVGF-EVVRE 278
            P   E  + I +RG  L  + +Y ++  +A   GF EV+ E
Sbjct: 391 GPPSSEFSEYIKQRGYDLHDVEAYGEMLRDA---GFIEVIAE 429


>GSVIVT01011715001 assembled CDS
          Length = 475

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 116 VDLLNVKPGDKILDAGCGVGGPMRAIAKHSGANVVGI--TINQYQVDRAKLHNKKAGLDK 173
           V  L++KP  K+LD GCG+GG    +A+     VVGI  +IN   +   +   +K  ++ 
Sbjct: 259 VTKLDLKPSQKVLDVGCGIGGGDFYMAEDFDVEVVGIDLSINMISIALERAIGRKCLVEF 318

Query: 174 QCDVVCGNFLKMPFDDNSFDGAYSVEATCHAPKLEEVYGEIYRVLKPGSFYISYEWVTTD 233
           +      +  K  + DN+FD  YS +   H      ++   ++ LKPG      + + TD
Sbjct: 319 E----VADCTKKTYPDNTFDVIYSRDTILHIQDKPALFKSFFKWLKPGG-----KVLITD 369

Query: 234 LYKSEDPTHVEIIQGIE-RGDALPGLRSYSDIAENAKKVGF-EVVRE 278
             K   P   E  + IE RG  L  +++Y  + ++A   GF EV+ E
Sbjct: 370 YCKRAGPPSPEFQEYIEQRGYDLHDVKAYGQMLKDA---GFCEVIAE 413


>GSVIVT01011713001 assembled CDS
          Length = 484

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 119 LNVKPGDKILDAGCGVGGPMRAIAKHSGANVVGITINQYQVDRAKLHNKKAGLDKQCDVV 178
           L +KPG K+LD GCG+GG    +A+     VVGI ++   +  A   ++  G ++  +  
Sbjct: 269 LELKPGQKVLDVGCGIGGGDFYMAEDFNVEVVGIDLSINMISIA--LDRAIGRNRLVEFE 326

Query: 179 CGNFLKMPFDDNSFDGAYSVEATCHAPKLEEVYGEIYRVLKPGSFYISYEWVTTDLYKSE 238
             +  K  + D++FD  YS +   H      ++   ++ LKPG      + + +D  K  
Sbjct: 327 VADCTKKTYPDSTFDVIYSRDTILHIQDKPALFRSFFKWLKPGG-----KVLISDYCKRS 381

Query: 239 DPTHVEIIQGI-ERGDALPGLRSYSDIAENAKKVGFEVVREKD 280
            P   E    I +RG  L  + +Y  + ++A   GF+ V  +D
Sbjct: 382 GPPSPEFEAYIGQRGYDLHDVEAYGQMLKDA---GFDEVIAED 421


>GSVIVT01009017001 assembled CDS
          Length = 350

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 21/220 (9%)

Query: 68  EEVPAFVDTFYN-LVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEFAVDLLNVKP--G 124
           E +PA  + F   L++ +YE GW Q+F +    PG        L +EF +    +KP  G
Sbjct: 129 ESMPAATEIFRTPLISFLYERGWRQNFIWG-GFPG--------LEKEFELAKGYLKPVLG 179

Query: 125 DKILDAGCGVGGPMRAIAKHSG--ANVVGITINQYQVDRA-KLHNKKAGLDKQ-CDVVCG 180
             I+DA CG G   R  AK SG  + VV +  ++  + +  +   ++ G  K+   +V  
Sbjct: 180 GTIVDASCGSGLFSRTFAK-SGLFSLVVALDFSENMLRQCYEFIKQEEGFPKENILLVRA 238

Query: 181 NFLKMPFDDNSFDGAYSVEATCHAPKLEEVYGEIYRVLKPGSFYISYEWVTTDLYKSEDP 240
           +  ++PF  +S D  ++  A    P       EI RVL+PG  +++  ++    + S  P
Sbjct: 239 DISRLPFASSSVDAVHAGAALHCWPSPSIAVAEISRVLRPGGVFVATTYLLDGPF-SVLP 297

Query: 241 THVEIIQGIER---GDALPGLRSYSDIAENAKKVGFEVVR 277
               + Q + R     A    R   D+       GF  VR
Sbjct: 298 FLKTLRQNMVRVAGSHAFLSERELEDLCTACGLGGFTCVR 337