Jatropha Genome Database

JcCA0139031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139031.10 - phase: 0 /partial
         (278 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014738001 assembled CDS                                       433   e-122

>GSVIVT01014738001 assembled CDS
          Length = 341

 Score =  433 bits (1114), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 201/276 (72%), Positives = 240/276 (86%), Gaps = 1/276 (0%)

Query: 1   MSDLKSKFLEVYSTLKSQLLNDPAFEFTDDSRQWLDRMLDYNVPRGKLYRGLAVIDCYKS 60
           MS+ KSKFLEVYS LKS+LLNDPAFEFTDDSRQW++RMLDYNVP GKL RGL+V+D YK 
Sbjct: 1   MSETKSKFLEVYSVLKSELLNDPAFEFTDDSRQWVERMLDYNVPGGKLNRGLSVVDSYKL 60

Query: 61  LKEGKELTNDEMLLACVLGWCIEWLQACAVVLDDIMDNSHTRRGQPCWYMLPKVGFIAIN 120
           L +G++LT+DE+ LACVLGWCIEWLQA  +VLDDIMDNSHTRRGQPCW+ +PKVG IA N
Sbjct: 61  L-QGRQLTDDEVFLACVLGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWFRVPKVGMIAAN 119

Query: 121 DGIILPNQVRRILKMYFREKPYYVHLLELFHEVEFQSVCGEMIDLISTHKGEQDLSNYSL 180
           DG+IL NQ+ RILK +F+ KPYYV LL+LF+EVEFQ+  G+MIDLI+T +GE+DLS YSL
Sbjct: 120 DGVILRNQIPRILKNHFKGKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSL 179

Query: 181 SLYHRIVEYKSAYYSIYLPVACSLLMAGENLESHAEAKKILIEITIYFQVQDDYQDCFGD 240
            L+ RIV+YK+AYYS YLPVAC+LLMAGENL++H   K IL+++ IYFQVQDDY DCFGD
Sbjct: 180 PLHRRIVQYKTAYYSFYLPVACALLMAGENLDNHTSVKDILVQMGIYFQVQDDYLDCFGD 239

Query: 241 PEITGKVGTDIEDCKCTWFVVKALELANEEQKKLLY 276
           P++ GK+GTDIED KC+W VVKALE+ NEEQKK LY
Sbjct: 240 PQVIGKIGTDIEDFKCSWLVVKALEICNEEQKKTLY 275