Jatropha Genome Database

JcCA0139011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139011.10 - phase: 0 /pseudo/partial
         (244 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031418001 assembled CDS                                       330   5e-91
GSVIVT01015684001 assembled CDS                                       328   1e-90
GSVIVT01036152001 assembled CDS                                       296   5e-81
GSVIVT01038790001 assembled CDS                                       112   2e-25
GSVIVT01010934001 assembled CDS                                        92   1e-19
GSVIVT01010687001 assembled CDS                                        88   3e-18
GSVIVT01014016001 assembled CDS                                        70   9e-13
GSVIVT01025003001 assembled CDS                                        64   8e-11
GSVIVT01035142001 assembled CDS                                        62   2e-10
GSVIVT01028014001 assembled CDS                                        60   8e-10
GSVIVT01025597001 assembled CDS                                        60   1e-09
GSVIVT01016574001 assembled CDS                                        59   2e-09

>GSVIVT01031418001 assembled CDS
          Length = 388

 Score =  330 bits (845), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 159/193 (82%), Positives = 171/193 (88%), Gaps = 9/193 (4%)

Query: 1   DPAYYILKEDESPCIFGPIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPR 60
           DP YY+LKED SPCIFGPIEKQRWSYACAKQLIERLIYAEGAEN LEFTIVRPFNWIGPR
Sbjct: 159 DPTYYVLKEDASPCIFGPIEKQRWSYACAKQLIERLIYAEGAENDLEFTIVRPFNWIGPR 218

Query: 61  MDFIPGIDGPSEGVPRVLACFSNALLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENP 120
           MDFIPGIDGPSEGVPRVLACFSN LLR EPLKLVDGGQSQRTFVYIKDAIEAVLLMI+NP
Sbjct: 219 MDFIPGIDGPSEGVPRVLACFSNNLLRHEPLKLVDGGQSQRTFVYIKDAIEAVLLMIDNP 278

Query: 121 ARASGHIFNVGNPHNEVTVRQLAEMMTEVYSKVSGEAALDVPTVDISSKGIF-------- 172
           ARA+GHIFNVGNP+NEVTVRQLAEMMTEVY+KVSGE +L+VPTVD+SSK  +        
Sbjct: 279 ARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPSLEVPTVDVSSKEFYGEGYDDSD 338

Query: 173 -MVRDMMIVTKEF 184
             + DM I+ K+ 
Sbjct: 339 KRIPDMTIINKQL 351


>GSVIVT01015684001 assembled CDS
          Length = 388

 Score =  328 bits (842), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 158/193 (81%), Positives = 171/193 (88%), Gaps = 9/193 (4%)

Query: 1   DPAYYILKEDESPCIFGPIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPR 60
           DPAYY+LKED SPCIFG IEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPR
Sbjct: 159 DPAYYLLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPR 218

Query: 61  MDFIPGIDGPSEGVPRVLACFSNALLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENP 120
           MDFIPGIDGPSEGVPRVLACFSN LLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMI+NP
Sbjct: 219 MDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIDNP 278

Query: 121 ARASGHIFNVGNPHNEVTVRQLAEMMTEVYSKVSGEAALDVPTVDISSKGIF-------- 172
            RA+GHIFNVGNP+NE TV+QLAEMMTEVY+KVSGE +L+VPTVD+SSK  +        
Sbjct: 279 GRANGHIFNVGNPNNEATVKQLAEMMTEVYAKVSGEPSLEVPTVDVSSKEFYGEGYDDSD 338

Query: 173 -MVRDMMIVTKEF 184
             + DM I+ K+ 
Sbjct: 339 KRIPDMTIINKQL 351


>GSVIVT01036152001 assembled CDS
          Length = 382

 Score =  296 bits (758), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 143/193 (74%), Positives = 164/193 (84%), Gaps = 10/193 (5%)

Query: 1   DPAYYILKEDESPCIFGPIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPR 60
           DP +YILKED SPCIFGP+EKQRWSYACAKQ+IERLIYAEGAE+GL+FTIVRPFNWIGPR
Sbjct: 155 DPDFYILKEDVSPCIFGPVEKQRWSYACAKQMIERLIYAEGAEHGLKFTIVRPFNWIGPR 214

Query: 61  MDFIPGIDGPSEGVPRVLACFSNALLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENP 120
           MDFIPGIDGP+EGVPRVLACFSN LLR EPLKLVDGG+SQRTF YIKDAIEAVLLMIENP
Sbjct: 215 MDFIPGIDGPTEGVPRVLACFSNNLLRGEPLKLVDGGKSQRTFCYIKDAIEAVLLMIENP 274

Query: 121 ARASGHIFNVGNPHNEVTVRQLAEMMTEVYSKVSGEAALDVPTVDISSKGIFMVR----- 175
            RA+G IFNVGNP+NEVT+RQLA++M EVY K+S  ++ D+ TVD+SSK  + V      
Sbjct: 275 ERANGQIFNVGNPNNEVTMRQLAQLMIEVYGKISVGSS-DLTTVDVSSKDFYGVGYDDSD 333

Query: 176 ----DMMIVTKEF 184
               DM I+ ++ 
Sbjct: 334 KRIPDMTIINRQL 346


>GSVIVT01038790001 assembled CDS
          Length = 178

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 23 RWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFS 82
          RWSYACAKQLIERL+Y EG E+GLEF+I++ FNWIGPRMDFIP IDG SE +PRVL CFS
Sbjct: 8  RWSYACAKQLIERLVYVEGVEHGLEFSIMKAFNWIGPRMDFIPSIDGFSEVIPRVLPCFS 67

Query: 83 NA 84
          N 
Sbjct: 68 NV 69


>GSVIVT01010934001 assembled CDS
          Length = 98

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 47/52 (90%)

Query: 66  GIDGPSEGVPRVLACFSNALLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMI 117
           GI+GPSEGVPRVL CFSN LL  EPLKLVDGGQSQRTFVYIKDAIE +L+MI
Sbjct: 44  GIEGPSEGVPRVLLCFSNNLLYHEPLKLVDGGQSQRTFVYIKDAIEEILVMI 95


>GSVIVT01010687001 assembled CDS
          Length = 135

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 60/103 (58%), Gaps = 5/103 (4%)

Query: 29  AKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNALLRR 88
           AKQ  ERL Y EG E+GLEFTIVRPF+WIG +MDFIP IDG SE + RVL CFSN     
Sbjct: 4   AKQKTERLNYVEGVEHGLEFTIVRPFSWIGHKMDFIPTIDGLSEAILRVLPCFSNVSFNI 63

Query: 89  EPLKLVDGGQSQRTFVY-IKDAIEAVLLMIENPARASGHIFNV 130
            P   V     Q  F++ I D +    +   +    S  IFNV
Sbjct: 64  YPNMYV----QQYFFLFLITDLVSLSHICSLHLNMISFQIFNV 102


>GSVIVT01014016001 assembled CDS
          Length = 39

 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 35/38 (92%)

Query: 24 WSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRM 61
          WSYAC KQLIERLIY EGAE+GL+FTIVRPF+ IGPR+
Sbjct: 2  WSYACGKQLIERLIYVEGAEHGLQFTIVRPFSRIGPRI 39


>GSVIVT01025003001 assembled CDS
          Length = 346

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 13/127 (10%)

Query: 23  RWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFS 82
           R  Y   K++ E L++    ++G+E  I R FN  GPRM+   G         RV++ F 
Sbjct: 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDG---------RVVSNFI 223

Query: 83  NALLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARASGHIFNVGNPHNEVTVRQL 142
              LR EPL +   G   R+F Y+ D ++ ++ ++E     +G I N+GNP  E T+ +L
Sbjct: 224 AQALRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLME--GENTGPI-NIGNP-GEFTMLEL 279

Query: 143 AEMMTEV 149
           AE + E+
Sbjct: 280 AETVKEL 286


>GSVIVT01035142001 assembled CDS
          Length = 345

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 17/129 (13%)

Query: 23  RWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFS 82
           R  Y   K+  E L  A     G+E  I R FN  GPRM    G         RV++ F 
Sbjct: 162 RSCYDEGKRTAETLTMAYHRGAGIEVRIARIFNTYGPRMCIDDG---------RVVSNFV 212

Query: 83  NALLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARASGHI--FNVGNPHNEVTVR 140
              LR+EPL +   G+  R+F Y+ D +E ++ ++E       H+  FN+GNP  E T+ 
Sbjct: 213 AQALRKEPLTVYGDGKQTRSFQYVSDLVEGLIRLMEGE-----HVGPFNLGNP-GEFTML 266

Query: 141 QLAEMMTEV 149
           +LA+++ E 
Sbjct: 267 ELAQVVQET 275


>GSVIVT01028014001 assembled CDS
          Length = 229

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 21/131 (16%)

Query: 23  RWSYACAKQLIERLI--YAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLAC 80
           R  Y   K+  E L   Y  GAE  +E  I R FN  GPRM    G         RV++ 
Sbjct: 43  RSCYDEGKRTAETLTMDYHRGAE--VEVRIARIFNTYGPRMCIDDG---------RVVSN 91

Query: 81  FSNALLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARASGHI--FNVGNPHNEVT 138
           F    LR+EPL +   G+  R+F Y+ D +E ++ ++E       H+  FN+GNP  E T
Sbjct: 92  FVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLIRLMEGE-----HVGPFNLGNP-GEFT 145

Query: 139 VRQLAEMMTEV 149
           + +LA+++ E 
Sbjct: 146 MLELAQVVQET 156


>GSVIVT01025597001 assembled CDS
          Length = 220

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 21/131 (16%)

Query: 23  RWSYACAKQLIERLI--YAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLAC 80
           R  Y   K+  E L   Y  GAE  +E  I R FN  GPRM    G         RV++ 
Sbjct: 43  RSCYDEGKRTAETLTMDYHRGAE--VEVRIARIFNTYGPRMCIDDG---------RVVSN 91

Query: 81  FSNALLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARASGHI--FNVGNPHNEVT 138
           F    +RR+PL +   G+  R+F Y+ D ++ ++ ++E       H+  FN+GNP  E T
Sbjct: 92  FVAQAIRRQPLTVYGDGKQTRSFQYVSDLVDGLVALMEGE-----HVGPFNLGNP-GEFT 145

Query: 139 VRQLAEMMTEV 149
           + +LAE++ E 
Sbjct: 146 MLELAEVVKET 156


>GSVIVT01016574001 assembled CDS
          Length = 345

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 13/127 (10%)

Query: 23  RWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFS 82
           R  Y   K++ E L++    ++G+E  I R FN  GPRM+   G         RV++ F 
Sbjct: 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDG---------RVVSNFI 223

Query: 83  NALLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARASGHIFNVGNPHNEVTVRQL 142
              +R E L +   G   R+F Y+ D ++ ++ ++E     +G I N+GNP  E T+ +L
Sbjct: 224 AQAIRGESLTVQAPGTQTRSFCYVSDMVDGLVRLME--GDNTGPI-NIGNP-GEFTMLEL 279

Query: 143 AEMMTEV 149
           AE + E+
Sbjct: 280 AETVKEL 286