Jatropha Genome Database

JcCA0138821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138821.10 + phase: 0 
         (73 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024084001 assembled CDS                                        71   1e-13
GSVIVT01018777001 assembled CDS                                        57   1e-09

>GSVIVT01024084001 assembled CDS
          Length = 329

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/57 (73%), Positives = 44/57 (77%), Gaps = 6/57 (10%)

Query: 19 PPDPCVAPPTRSQP--SQRPESEVKD---ARKVLKADREKLRRDRLNEQFIELGNAL 70
          PPDP V+  TRS P  S+R E E KD   ARKV KADREKLRRDRLNEQFIELGNAL
Sbjct: 17 PPDPRVSS-TRSHPDSSKRSEGEFKDFVTARKVQKADREKLRRDRLNEQFIELGNAL 72


>GSVIVT01018777001 assembled CDS
          Length = 326

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 31/40 (77%), Gaps = 3/40 (7%)

Query: 34 QRPESEVKD---ARKVLKADREKLRRDRLNEQFIELGNAL 70
          QR E E KD   ARKV KADREKLRRDRLNE F+ELGN L
Sbjct: 37 QRTEVEAKDSIAARKVQKADREKLRRDRLNEHFLELGNTL 76