Jatropha Genome Database

JcCA0138571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138571.10 + phase: 0 /pseudo/partial
         (145 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025728001 assembled CDS                                       109   4e-25

>GSVIVT01025728001 assembled CDS
          Length = 106

 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 78/145 (53%), Gaps = 39/145 (26%)

Query: 1   MGFGFAIGTFGVLILGHATYSTIQSXRLWRRNFQDLQXMXVLFFFYLFICFPCLCLTVRI 60
           MG GFA+G FGVLIL HA YSTIQ   L +   ++               F    +TV  
Sbjct: 1   MGLGFAVGVFGVLILAHAAYSTIQYRGLLKIMEEE---------------FSGPPMTV-- 43

Query: 61  YFCVDGCLGLCKISPFXXXXXXXXXXXXXXXFCFWAALTVPGKFRSIHPYSDENRIVSLP 120
               +  LGL                      C WA LTVPGKF SIHP S+ENRIVSLP
Sbjct: 44  --LAEVLLGLG--------------------LCMWAGLTVPGKFLSIHPDSEENRIVSLP 81

Query: 121 ANMDFMVFNHRGKVFPSEMDMKLKH 145
            N+DFM+FNHRG+ F SE+DMKLK+
Sbjct: 82  LNVDFMIFNHRGRAFSSEIDMKLKY 106