Jatropha Genome Database

JcCA0138521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138521.10 - phase: 0 /partial
         (243 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033498001 assembled CDS                                       420   e-118

>GSVIVT01033498001 assembled CDS
          Length = 439

 Score =  420 bits (1079), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/243 (82%), Positives = 220/243 (90%)

Query: 1   MDMDGEKNLQRKQAIYSSLDETFKIQKETYRGQQYSQIYFARLHMMRTLLYSLVPHWKNH 60
           M++D EK+LQRKQ++Y SLDE F+I+KETYRGQQYSQIYFARLHMMRTL+YSL+P+WK H
Sbjct: 1   MEIDAEKHLQRKQSLYESLDEKFRIEKETYRGQQYSQIYFARLHMMRTLIYSLIPNWKPH 60

Query: 61  LTVCTILGLEEGKECIIVGTLYKHMKLKPCILDEYSKERSAVPLVKPHNFMHPDDYLVLE 120
           L VCT+LGLEEGKECIIVGTLYKHMKLKPCILDEYSKERS  PLVKPHNFMH DD LVLE
Sbjct: 61  LPVCTVLGLEEGKECIIVGTLYKHMKLKPCILDEYSKERSVAPLVKPHNFMHSDDSLVLE 120

Query: 121 DESGRVKLGGDMLSPSAYVTGVVVALHGKETSAGDFLVLDVLEAGLAPQIELPLQPREDK 180
           DESGRVKLGG ML PS YVTG VV LHGKETSAG+FLV D+L+A L PQIELPL+ REDK
Sbjct: 121 DESGRVKLGGTMLLPSVYVTGTVVGLHGKETSAGEFLVQDILDADLPPQIELPLKSREDK 180

Query: 181 YVVFVSGLSLGSIRSNPLQFQLLVDHITGHLGDEQEQGIVAEIVHVVVAGNSVEIPVGLL 240
           YVVFVSGLS+GS  SNPLQFQLLVDHITGHLGDE+EQGI A+IVHVV+AGNSV +P GLL
Sbjct: 181 YVVFVSGLSVGSSTSNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVIAGNSVAVPRGLL 240

Query: 241 NGQ 243
           NGQ
Sbjct: 241 NGQ 243