Jatropha Genome Database

JcCA0138491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138491.10 + phase: 0 /partial
         (407 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021184001 assembled CDS                                       667   0.0  
GSVIVT01003940001 assembled CDS                                       616   e-177
GSVIVT01024702001 assembled CDS                                       518   e-147
GSVIVT01012373001 assembled CDS                                        87   1e-17
GSVIVT01005052001 assembled CDS                                        79   6e-15
GSVIVT01004503001 assembled CDS                                        78   7e-15

>GSVIVT01021184001 assembled CDS
          Length = 577

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/378 (84%), Positives = 342/378 (90%)

Query: 25  TCSGTLGRHLARRLVEIGVSDVFSVPGDFNLTLLDHLIAEPGLNLVGCCNELNXXXXXXX 84
           +CSGTLG HLARRLV+IGV DVFSVPGDFNLTLLDHLIAEPGLNLVGCCNELN       
Sbjct: 12  SCSGTLGGHLARRLVQIGVRDVFSVPGDFNLTLLDHLIAEPGLNLVGCCNELNAGYAADG 71

Query: 85  XXXXXXXXXCVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 144
                    CVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP
Sbjct: 72  YARARGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 131

Query: 145 DFSQELRCFQTVTCFQAVVNNLDDAHEQIDTAISTALKESKPAYISISCNLPGIPHPTFA 204
           DF+QELR FQTVTC QAVVN+L+DAHEQIDTAISTALKESKP Y+SISCNLPGIPHPTF+
Sbjct: 132 DFTQELRSFQTVTCTQAVVNHLEDAHEQIDTAISTALKESKPVYLSISCNLPGIPHPTFS 191

Query: 205 REPVPFCLAPNVSNQLGLEAAVEATAAFLNKAVKPVIVAGPKLRVAKAQKAFVELADASG 264
           REPVPF LAP VSNQ+GLEAAVEATA FLN+AVKPVIV GPKLRVAKAQ+A +ELADASG
Sbjct: 192 REPVPFFLAPKVSNQIGLEAAVEATADFLNRAVKPVIVGGPKLRVAKAQRALMELADASG 251

Query: 265 YPVAVMPSGKGLVPEHHPHFIGTYWGAVSTSFCGEIVESADAYIFIGPIFNDYSSVGYSL 324
           YP+AVMPSGKGLVPE HPHFIGTYWGAVST+FCGEIVESADAY+F GPIFNDYSSVGYSL
Sbjct: 252 YPIAVMPSGKGLVPEQHPHFIGTYWGAVSTTFCGEIVESADAYVFAGPIFNDYSSVGYSL 311

Query: 325 LINKEKAVIVQANRVAIGNGPSFGWVFMTEFLSALAKKLRKNSTAMENYRRIFVPPGLPL 384
           LI KEKAVIV+ NRV +GNGPSFGWVFM +FLSALAKKL+KN TA+ENYRRI+VPPG+PL
Sbjct: 312 LIKKEKAVIVEPNRVTVGNGPSFGWVFMADFLSALAKKLKKNETAVENYRRIYVPPGVPL 371

Query: 385 KSEKDEPLRVNVLFKHIQ 402
           + E+ E LRVNVLFKHIQ
Sbjct: 372 RREEHEALRVNVLFKHIQ 389


>GSVIVT01003940001 assembled CDS
          Length = 605

 Score =  616 bits (1589), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 303/374 (81%), Positives = 329/374 (87%)

Query: 29  TLGRHLARRLVEIGVSDVFSVPGDFNLTLLDHLIAEPGLNLVGCCNELNXXXXXXXXXXX 88
           TLGRHLARRLV+IGVSDVFSVPGDFNLTLLDHLIAEPGL  +GCCNELN           
Sbjct: 44  TLGRHLARRLVQIGVSDVFSVPGDFNLTLLDHLIAEPGLKNIGCCNELNAGYAADGYARS 103

Query: 89  XXXXXCVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQ 148
                CVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQ
Sbjct: 104 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQ 163

Query: 149 ELRCFQTVTCFQAVVNNLDDAHEQIDTAISTALKESKPAYISISCNLPGIPHPTFAREPV 208
           E RCFQTVTC+QAVVNNL+DAHEQIDTAISTALKESKP YISISCNLPGIPHPTF+REPV
Sbjct: 164 EFRCFQTVTCYQAVVNNLEDAHEQIDTAISTALKESKPVYISISCNLPGIPHPTFSREPV 223

Query: 209 PFCLAPNVSNQLGLEAAVEATAAFLNKAVKPVIVAGPKLRVAKAQKAFVELADASGYPVA 268
           PFCLAP V+NQ+GLEAAVEA AAFLNKAVKPV+V GPKLRVAKA +AFVELADA GYPVA
Sbjct: 224 PFCLAPKVTNQMGLEAAVEAAAAFLNKAVKPVMVGGPKLRVAKACEAFVELADACGYPVA 283

Query: 269 VMPSGKGLVPEHHPHFIGTYWGAVSTSFCGEIVESADAYIFIGPIFNDYSSVGYSLLINK 328
           VMPS KGLVPE HP FIGTYWGAVST+FC EIVESAD+YIF GPIFNDYSSVGYSLL+ K
Sbjct: 284 VMPSAKGLVPECHPRFIGTYWGAVSTAFCAEIVESADSYIFAGPIFNDYSSVGYSLLLKK 343

Query: 329 EKAVIVQANRVAIGNGPSFGWVFMTEFLSALAKKLRKNSTAMENYRRIFVPPGLPLKSEK 388
           +KA++VQ  RV IGNGP+FG + M +FL AL+K+L+ N+TA ENY RI+VP G PL+S+ 
Sbjct: 344 DKAILVQPERVVIGNGPAFGCILMKDFLKALSKRLKCNTTAYENYHRIYVPEGQPLRSDP 403

Query: 389 DEPLRVNVLFKHIQ 402
            EPLRVNVLF+HIQ
Sbjct: 404 KEPLRVNVLFQHIQ 417


>GSVIVT01024702001 assembled CDS
          Length = 577

 Score =  518 bits (1335), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/399 (66%), Positives = 301/399 (75%), Gaps = 30/399 (7%)

Query: 4   AANQLGSIAQPSSVPASVAGKTCSGTLGRHLARRLVEIGVSDVFSVPGDFNLTLLDHLIA 63
           +A Q G+++     P+         TLG H+A RLV+IGV                    
Sbjct: 21  SAPQNGTVSTIQDSPSPAHPTGSRATLGSHIAHRLVQIGV-------------------- 60

Query: 64  EPGLNLVGCCNELNXXXXXXXXXXXXXXXXCVVTFTVGGLSVLNAIAGAYSENLPVICIV 123
                     N+LN                CVVTFTVGGLS+LNAIAGAYSENLPVICIV
Sbjct: 61  ----------NDLNAGYAADGYARARGVGACVVTFTVGGLSILNAIAGAYSENLPVICIV 110

Query: 124 GGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCFQAVVNNLDDAHEQIDTAISTALKE 183
           GGPN+NDYGTNRILHHTIGLPDFSQE+RCFQ VTC+QA++N+LD+AHE ID AISTALKE
Sbjct: 111 GGPNTNDYGTNRILHHTIGLPDFSQEVRCFQPVTCYQAIINHLDEAHELIDKAISTALKE 170

Query: 184 SKPAYISISCNLPGIPHPTFAREPVPFCLAPNVSNQLGLEAAVEATAAFLNKAVKPVIVA 243
           SKP YIS+SCNLP I HPTF+REP+PF L+P +SN  GL+AAVEA AAFLNKAVKPVIV 
Sbjct: 171 SKPVYISVSCNLPTIFHPTFSREPIPFALSPKMSNCKGLDAAVEAAAAFLNKAVKPVIVG 230

Query: 244 GPKLRVAKAQKAFVELADASGYPVAVMPSGKGLVPEHHPHFIGTYWGAVSTSFCGEIVES 303
           GPKLRVAKA KAFVELADA GY +AVMPS KGLVPEHHPHFIGTYWGAV T+FCGEIVES
Sbjct: 231 GPKLRVAKATKAFVELADACGYALAVMPSAKGLVPEHHPHFIGTYWGAVGTAFCGEIVES 290

Query: 304 ADAYIFIGPIFNDYSSVGYSLLINKEKAVIVQANRVAIGNGPSFGWVFMTEFLSALAKKL 363
           ADAY+F+GPIFNDYSSVGYSLL+ +EKA+IVQ  RV I NGP+FG V M +FL ALAK+L
Sbjct: 291 ADAYVFVGPIFNDYSSVGYSLLLKREKAIIVQPERVVIANGPAFGCVLMKDFLPALAKRL 350

Query: 364 RKNSTAMENYRRIFVPPGLPLKSEKDEPLRVNVLFKHIQ 402
             N+TA ENYRRI +P G+PLK E  EPLRVN+LF+HIQ
Sbjct: 351 NNNTTAYENYRRIHIPDGVPLKCEPTEPLRVNILFQHIQ 389


>GSVIVT01012373001 assembled CDS
          Length = 198

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 52/67 (77%)

Query: 8   LGSIAQPSSVPASVAGKTCSGTLGRHLARRLVEIGVSDVFSVPGDFNLTLLDHLIAEPGL 67
           LG  A+ +SV  ++   +   TLG HLARRLV+IGVSDVFS+PGDFNLTLLDHLIAE GL
Sbjct: 90  LGIEAKHASVAPTIDIASSEATLGSHLARRLVQIGVSDVFSIPGDFNLTLLDHLIAELGL 149

Query: 68  NLVGCCN 74
           N +GC +
Sbjct: 150 NNIGCWS 156


>GSVIVT01005052001 assembled CDS
          Length = 537

 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 7/93 (7%)

Query: 310 IGPIFNDYSSVGYSLLINKEKAVIVQANRVAIGNGPSFGWVFMTEFLSALAKKLRKNSTA 369
           + P+ +D+ SV  S+       V+     +++ NGP+FG + M +FL +L+K+L+ N+TA
Sbjct: 91  LDPVRSDHCSVCSSIF---SHTVLC----LSLANGPAFGCILMKDFLKSLSKRLKCNTTA 143

Query: 370 MENYRRIFVPPGLPLKSEKDEPLRVNVLFKHIQ 402
            ENY R +VP G   KS+  EPLRV VLF+HIQ
Sbjct: 144 YENYHRDYVPEGQSPKSDPKEPLRVYVLFQHIQ 176


>GSVIVT01004503001 assembled CDS
          Length = 550

 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 60/93 (64%), Gaps = 7/93 (7%)

Query: 310 IGPIFNDYSSVGYSLLINKEKAVIVQANRVAIGNGPSFGWVFMTEFLSALAKKLRKNSTA 369
           + P+ +D+ SV  S+       V+     +++ NGP+FG + M +FL +L+K+L+ N+TA
Sbjct: 85  LDPVHSDHCSVCSSIF---SHTVLC----LSLANGPAFGCILMKDFLKSLSKRLKCNTTA 137

Query: 370 MENYRRIFVPPGLPLKSEKDEPLRVNVLFKHIQ 402
            ENY R++VP G   K +  EPLRV VLF+HIQ
Sbjct: 138 YENYHRVYVPEGQSPKPDPKEPLRVYVLFQHIQ 170