Jatropha Genome Database

JcCA0136721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0136721.10 - phase: 0 
         (256 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015036001 assembled CDS                                       423   e-119
GSVIVT01008295001 assembled CDS                                       390   e-109
GSVIVT01037354001 assembled CDS                                        58   4e-09
GSVIVT01011742001 assembled CDS                                        56   1e-08
GSVIVT01025759001 assembled CDS                                        55   3e-08

>GSVIVT01015036001 assembled CDS
          Length = 251

 Score =  423 bits (1088), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/250 (83%), Positives = 232/250 (92%), Gaps = 1/250 (0%)

Query: 8   ASSISVTARNLASFEGLRPSTVKFASFG-NLKAAGLSQRSFRGLVVKAATVVAPKYTSIK 66
           A++ +++ R+L SFEGLRPSTV+ +S G  LKA GL+QRSFR LVV+AATVV PKYTS+K
Sbjct: 2   ATAPTISTRSLPSFEGLRPSTVRISSMGLPLKAGGLTQRSFRSLVVRAATVVTPKYTSLK 61

Query: 67  PLGDRVLVKIKVAEEKTEGGILLPTTAQSKPQGGEVVAVGEGKTIGKTKLDISVKTGAQV 126
           PLGDRVLVKIK AEEKT GGILLPTTAQ+KPQGGEVVAVGEGKTIGK KLDI VKTGAQV
Sbjct: 62  PLGDRVLVKIKTAEEKTVGGILLPTTAQTKPQGGEVVAVGEGKTIGKNKLDICVKTGAQV 121

Query: 127 IYSKYAGTEVEFNGSPHLILKEDDIVGVLETDDIKDLKPCNDRVFIKVAEAEEKTAGGLL 186
           +YSKYAGTEVEFNGS HLILKEDDIVG+LETDD+KDLKP NDRV IKVAEAEEKTAGGLL
Sbjct: 122 VYSKYAGTEVEFNGSNHLILKEDDIVGILETDDVKDLKPLNDRVLIKVAEAEEKTAGGLL 181

Query: 187 LTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSITPGNTVLYSKYAGNDFKGSDGTNYIAL 246
           LTEASKEKPSIGTV+AVGPGPLDE+G RKPLS++PGNTVLYSKYAGNDFKGSDG++YIAL
Sbjct: 182 LTEASKEKPSIGTVVAVGPGPLDEDGKRKPLSVSPGNTVLYSKYAGNDFKGSDGSDYIAL 241

Query: 247 RASDVMAVLS 256
           +ASD+MAVLS
Sbjct: 242 KASDIMAVLS 251


>GSVIVT01008295001 assembled CDS
          Length = 251

 Score =  390 bits (1001), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/250 (77%), Positives = 222/250 (88%), Gaps = 1/250 (0%)

Query: 8   ASSISVTARNLASFEGLRPSTVKFASFG-NLKAAGLSQRSFRGLVVKAATVVAPKYTSIK 66
           A++ +++ R+L SFEGLRPSTV+       L+AAGL+QR  RGLVV+AAT + PKYTS+K
Sbjct: 2   ATAPAISTRSLPSFEGLRPSTVRVPLVRLPLRAAGLTQRPVRGLVVRAATSIGPKYTSLK 61

Query: 67  PLGDRVLVKIKVAEEKTEGGILLPTTAQSKPQGGEVVAVGEGKTIGKTKLDISVKTGAQV 126
           PL DRVLVKIK  EEKT GGILLPTTAQ+KPQGGEVVAVGEG+T+GK K+DI VKTG  V
Sbjct: 62  PLADRVLVKIKTVEEKTGGGILLPTTAQTKPQGGEVVAVGEGRTVGKNKVDIGVKTGTSV 121

Query: 127 IYSKYAGTEVEFNGSPHLILKEDDIVGVLETDDIKDLKPCNDRVFIKVAEAEEKTAGGLL 186
           +YSKYAGTE+EFNGS HLILKEDDIVG+LETDDIKDLKP NDRV IKVA AEEKTAGGLL
Sbjct: 122 VYSKYAGTELEFNGSNHLILKEDDIVGILETDDIKDLKPLNDRVLIKVAVAEEKTAGGLL 181

Query: 187 LTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSITPGNTVLYSKYAGNDFKGSDGTNYIAL 246
           LTEA+KEKPSIGTVIAVGPG LD EGNRKPLS++PG+T++YSKYAGN+FKGSDG++YIAL
Sbjct: 182 LTEATKEKPSIGTVIAVGPGSLDGEGNRKPLSLSPGSTIMYSKYAGNEFKGSDGSDYIAL 241

Query: 247 RASDVMAVLS 256
           RASDVMAVLS
Sbjct: 242 RASDVMAVLS 251


>GSVIVT01037354001 assembled CDS
          Length = 97

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 161 KDLKPCNDRVFIKVAEAEEKTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIT 220
           K L P  +R+ ++      KT  G+LL E + +  S G V+AVGPG  D +G   PLS+ 
Sbjct: 3   KRLIPTLNRILVEKIVPPSKTNAGILLPEKTAQLNS-GKVVAVGPGARDRDGKLIPLSVR 61

Query: 221 PGNTVLYSKYAGNDFKGSDGTNYIALRASDVMAVLS 256
            G+TVL  +Y GN  K  D   Y   R  D++  L 
Sbjct: 62  EGDTVLLPEYGGNQVKLGD-KEYHLFRDDDILGTLH 96



 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 4/92 (4%)

Query: 67  PLGDRVLVKIKVAEEKTEGGILLP-TTAQSKPQGGEVVAVGEGKTIGKTKL-DISVKTGA 124
           P  +R+LV+  V   KT  GILLP  TAQ     G+VVAVG G      KL  +SV+ G 
Sbjct: 7   PTLNRILVEKIVPPSKTNAGILLPEKTAQL--NSGKVVAVGPGARDRDGKLIPLSVREGD 64

Query: 125 QVIYSKYAGTEVEFNGSPHLILKEDDIVGVLE 156
            V+  +Y G +V+     + + ++DDI+G L 
Sbjct: 65  TVLLPEYGGNQVKLGDKEYHLFRDDDILGTLH 96


>GSVIVT01011742001 assembled CDS
          Length = 97

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 161 KDLKPCNDRVFIKVAEAEEKTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIT 220
           K L P  +RV ++      KT+ G+LL E S +  S G VIAVGPG  D EG   P+ + 
Sbjct: 3   KRLIPTLNRVLVEKIIPPSKTSAGILLPEKSPQLNS-GKVIAVGPGLRDREGKVIPVGVK 61

Query: 221 PGNTVLYSKYAGNDFKGSDGTNYIALRASDVMAVLS 256
            G+TVL  +Y G+  K  D   Y   R  D++  L 
Sbjct: 62  EGDTVLLPEYGGSQIK-LDDKEYHLYRDEDILGTLH 96


>GSVIVT01025759001 assembled CDS
          Length = 97

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 161 KDLKPCNDRVFIKVAEAEEKTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIT 220
           K L P  +RV ++      KT  G+LL E +K+  S G V+AVGPG  D EG   P+ + 
Sbjct: 3   KRLIPSLNRVLVEKIIPPSKTNTGVLLPEKTKKLNS-GKVVAVGPGLWDREGKLIPVGVK 61

Query: 221 PGNTVLYSKYAGNDFKGSDGTNYIALRASDVMAVLS 256
            G+TVL  +Y G + K  D   Y   R  D++  L 
Sbjct: 62  EGDTVLLPEYGGTEVKLGD-KEYHLYRDEDILGTLH 96



 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 70  DRVLVKIKVAEEKTEGGILLPTTAQSKPQGGEVVAVGEGKTIGKTKL-DISVKTGAQVIY 128
           +RVLV+  +   KT  G+LLP   + K   G+VVAVG G    + KL  + VK G  V+ 
Sbjct: 10  NRVLVEKIIPPSKTNTGVLLPEKTK-KLNSGKVVAVGPGLWDREGKLIPVGVKEGDTVLL 68

Query: 129 SKYAGTEVEFNGSPHLILKEDDIVGVLE 156
            +Y GTEV+     + + +++DI+G L 
Sbjct: 69  PEYGGTEVKLGDKEYHLYRDEDILGTLH 96