Jatropha Genome Database

JcCA0136621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0136621.10 - phase: 0 /partial
         (264 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008832001 assembled CDS                                        77   6e-15

>GSVIVT01008832001 assembled CDS
          Length = 204

 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 41/45 (91%)

Query: 200 MVDFISSLGEHLGNVEGFDFHEFPSLERLAMITEQQLREAGFGYR 244
           MVDF+SSLG +LG+V GFDF+EFPSL+RL+M++E+  REAGFGYR
Sbjct: 1   MVDFVSSLGNYLGSVGGFDFYEFPSLDRLSMVSEEDFREAGFGYR 45