Jatropha Genome Database

JcCA0136421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0136421.10 + phase: 0 /partial
         (169 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033852001 assembled CDS                                       189   8e-49
GSVIVT01025217001 assembled CDS                                       147   2e-36
GSVIVT01005048001 assembled CDS                                       145   8e-36
GSVIVT01005049001 assembled CDS                                       145   1e-35
GSVIVT01033673001 assembled CDS                                       136   6e-33

>GSVIVT01033852001 assembled CDS
          Length = 279

 Score =  189 bits (479), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 92/172 (53%), Positives = 125/172 (72%), Gaps = 3/172 (1%)

Query: 1   VHFDNGCGALIIDGKNYKLIQLHWHSPSEHQINGVHYPLELHLVHLAEDGARSVVAVLYK 60
           V FD   G L++DGKNY L Q+HWHSPSEH+I+G+ YP ELHLVH  +DG  +VV +LY+
Sbjct: 102 VRFDEDVGVLLVDGKNYSLKQMHWHSPSEHRIDGLQYPAELHLVHRTDDGNIAVVGILYQ 161

Query: 61  YGPENPFIAKIHNGLGKLAKNEYGN---GHVPLEQLDVKPLKKKTSKYFRYIGSLTTPPC 117
           YG  +P ++K+ N L +LAK+   +     V L  +D K +++ T +Y+RY+GSLTTPPC
Sbjct: 162 YGDADPLLSKLKNKLDELAKDVCASNEQSQVSLGTMDTKLIRRNTRRYYRYMGSLTTPPC 221

Query: 118 TENVIWNVLGKARTVSKEQVEALKAPLEKAYKHNNRPVQPLNGRKVSLYKET 169
           +E V W++LGK R +SK+QV ALKAPL    K N+RP+QPLNGR++ LY ET
Sbjct: 222 SEKVAWHILGKIRDISKDQVAALKAPLNSDCKDNSRPLQPLNGRRIQLYDET 273


>GSVIVT01025217001 assembled CDS
          Length = 274

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 104/165 (63%), Gaps = 2/165 (1%)

Query: 3   FDNGCGALIIDGKNYKLIQLHWHSPSEHQINGVHYPLELHLVHLAEDGARSVVAVLYKYG 62
           ++   G++ I+G  Y+L Q HWHSPSEH +NG  + LELH++H    G  SVV ++YK G
Sbjct: 105 WEGDAGSIQINGTKYELKQCHWHSPSEHTVNGKRFDLELHMLHETPSGKTSVVGIMYKIG 164

Query: 63  PENPFIAKIHNGLGKLAKNEYGNGHVPLEQLDVKPLKKKTSKYFRYIGSLTTPPCTENVI 122
             + F++ + + L  L+ +      V +  +D + +K  + KY+RY+GSLTTPPCTE+VI
Sbjct: 165 RADSFLSTLTDHLEALSDSSDQERDVGV--VDPRHIKIGSRKYYRYMGSLTTPPCTEDVI 222

Query: 123 WNVLGKARTVSKEQVEALKAPLEKAYKHNNRPVQPLNGRKVSLYK 167
           W ++ K RTV++EQV  L+  +      N RP+QP+N R V  Y+
Sbjct: 223 WTIVNKVRTVTREQVNLLRVAVHDDSGSNARPIQPINRRSVHFYR 267


>GSVIVT01005048001 assembled CDS
          Length = 276

 Score =  145 bits (367), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 101/167 (60%), Gaps = 4/167 (2%)

Query: 1   VHFDNGCGALIIDGKNYKLIQLHWHSPSEHQINGVHYPLELHLVHLAEDGARSVVAVLYK 60
           V +    G + I+G  +KL Q HWHSPSEH  NG  Y LELH++HL+ D   +V+ + YK
Sbjct: 106 VEWKGYAGKININGTYFKLQQCHWHSPSEHTFNGSRYNLELHVIHLSSDEKIAVIGITYK 165

Query: 61  YGPENPFIAKIHNGLGKLAKNEYGNGHVPLEQLDVKPLKKKTSKYFRYIGSLTTPPCTEN 120
           YG  +PF+ ++   +  L   E       L  ++   +K  + KY+RYIGSLT PPCTE 
Sbjct: 166 YGRADPFLTRMLRHIDSLPVGE----EKELGIVNPGDIKFGSRKYYRYIGSLTVPPCTEG 221

Query: 121 VIWNVLGKARTVSKEQVEALKAPLEKAYKHNNRPVQPLNGRKVSLYK 167
           VIW +  K RT ++EQV AL+  ++  Y+ N RP Q ++GR V LYK
Sbjct: 222 VIWTISKKVRTATREQVRALRKAVQDGYEANARPSQEVDGRTVLLYK 268


>GSVIVT01005049001 assembled CDS
          Length = 271

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 103/166 (62%), Gaps = 4/166 (2%)

Query: 1   VHFDNGCGALIIDGKNYKLIQLHWHSPSEHQINGVHYPLELHLVHLAEDGARSVVAVLYK 60
           V +    G + + G ++KL QLHWH+PSEH +NG  + +ELHLVH +  G  +V+   +K
Sbjct: 100 VEWKGNAGKIKLHGVHFKLEQLHWHTPSEHTVNGTSFQMELHLVHKSARGKIAVIGKTFK 159

Query: 61  YGPENPFIAKIHNGLGKLAKNEYGNGHVPLEQLDVKPLKKKTSKYFRYIGSLTTPPCTEN 120
            GP +PF+AK+ + +  +   E  +    +  +D   +K    KY+RYIGSLTTPPCTE 
Sbjct: 160 LGPPDPFLAKMIDHVTGIPAGEEKD----IGIVDANDIKHWGRKYYRYIGSLTTPPCTEG 215

Query: 121 VIWNVLGKARTVSKEQVEALKAPLEKAYKHNNRPVQPLNGRKVSLY 166
           VIW +  K  TVSKEQVE+L+  +   ++ N RP Q LNGR V LY
Sbjct: 216 VIWTISKKVNTVSKEQVESLRRVVHDGHEGNARPAQRLNGRPVWLY 261


>GSVIVT01033673001 assembled CDS
          Length = 270

 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 100/160 (62%), Gaps = 3/160 (1%)

Query: 7   CGALIIDGKNYKLIQLHWHSPSEHQINGVHYPLELHLVHLAEDGARSVVAVLYKYGPENP 66
            G++ I+G  YKL Q HWH+PSEH ING  Y LELH+VH++ D   +VV ++YK G  + 
Sbjct: 111 AGSIRINGTEYKLQQGHWHAPSEHSINGRRYDLELHMVHVSPDNNIAVVGLIYKTGQPDK 170

Query: 67  FIAKIHNGLGKLAKNEYGNGHVPLEQLDVKPLKKKTSKYFRYIGSLTTPPCTENVIWNVL 126
           F++K+ + +  +A          +   D+K   +   KY++Y+GSLT PPCTE V W + 
Sbjct: 171 FLSKMMSNITSMADKMEQRKMGVIHPGDIKMGGR---KYYKYMGSLTVPPCTEGVTWIIN 227

Query: 127 GKARTVSKEQVEALKAPLEKAYKHNNRPVQPLNGRKVSLY 166
            K RTVS+EQV+ L+  +    + N RPVQPLN R+V LY
Sbjct: 228 KKIRTVSREQVKQLRLAVHDYAEMNARPVQPLNLREVQLY 267