Jatropha Genome Database

JcCA0135781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0135781.10 - phase: 0 /partial
         (261 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012228001 assembled CDS                                       343   6e-95

>GSVIVT01012228001 assembled CDS
          Length = 645

 Score =  343 bits (879), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 177/275 (64%), Positives = 206/275 (74%), Gaps = 22/275 (8%)

Query: 1   DSSKTLWFGRDAFGRRSLLVHWPTVKDPQFMLSSVSPFSAVDQSSGADLGVED-CTEPNF 59
           DSS+T+WFGRDAFGRRSLLVHWP ++D +F+LSSVSP S+V+QSS  D  VE+  T  NF
Sbjct: 179 DSSRTMWFGRDAFGRRSLLVHWPNLEDCRFLLSSVSPISSVEQSS--DFEVENRITNINF 236

Query: 60  WEELSCGIYSLSMAASKLHGCTFGEVKRHEWANTALINLIKWERVSVEPKPEELSF---- 115
           W+ELSCG+YS+S+ +SK   C  GEVK+HEW N  L  L+KWER  VEPKP EL F    
Sbjct: 237 WDELSCGVYSVSIGSSKADKCLLGEVKKHEWTNPILKELVKWERTYVEPKPAELHFMIPS 296

Query: 116 ---------------SCGLDQTSFSLPARNVLSALKKSVMLRTSLHTIFKAGTSDGGQEE 160
                            G  QTS  +PA+ VL AL++S+M RT+   IF A T D  QEE
Sbjct: 297 KQPDVHSICLERKPSGLGPMQTSVPVPAQTVLIALRESMMRRTTQSAIFPAVTCDLQQEE 356

Query: 161 LVPVAVLFSGGLDSMILAALLDQCLDPSYGIDLLNVSFDGQFAPDRISAKAGVEELSRIA 220
           LVPVA+LFSGGLDSMILAALLD+CL PSYGIDLLNVSFDGQ APDRISAKAG++EL RI+
Sbjct: 357 LVPVAILFSGGLDSMILAALLDECLQPSYGIDLLNVSFDGQSAPDRISAKAGLKELQRIS 416

Query: 221 PLRRWKLVEIDADLSKLKLEMKHVMALINPANTYM 255
           PLRRWKLVE+DADLSKL  E KHVM+LINPA TYM
Sbjct: 417 PLRRWKLVEVDADLSKLTQETKHVMSLINPAKTYM 451