Jatropha Genome Database

JcCA0134961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134961.10 - phase: 0 /partial
         (185 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003974001 assembled CDS                                       285   6e-78

>GSVIVT01003974001 assembled CDS
          Length = 328

 Score =  285 bits (730), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 140/184 (76%), Positives = 155/184 (84%)

Query: 1   QLDGIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPEDNDLTRGVYER 60
           Q DGIRPF MPLMKLACTALERVPLTR KIIE+LMKKF+QDLVFCRAP D+DLT GV ER
Sbjct: 143 QTDGIRPFTMPLMKLACTALERVPLTRMKIIEYLMKKFHQDLVFCRAPGDSDLTIGVLER 202

Query: 61  QVEKIDPLLDWVKSEFGFKPVVHSSFFGGKQEEGLVKAIEDLLQKTDNFEXXXXXXXXXX 120
           QVEKIDPLL WV+S+FGFKP+V+SSFFGGKQE+GLV AIE+LL+KTD+ E          
Sbjct: 203 QVEKIDPLLQWVESQFGFKPIVYSSFFGGKQEDGLVNAIENLLKKTDDCELAAIDAIASA 262

Query: 121 XXXXXXXXGIFRGKLDIEEAIQLIRLEEDLQVDKWGLVEGGHDVDIADLRVQVSSAAVFL 180
                   GIFRGKL IEEAI+LIRLEEDLQVDKWGLVEGGHDVD+ADL+VQ+SSAA FL
Sbjct: 263 AHSLTIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDVDVADLKVQISSAAAFL 322

Query: 181 GLSR 184
           GLSR
Sbjct: 323 GLSR 326