Jatropha Genome Database

JcCA0134821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134821.20 + phase: 2 /partial
         (262 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009070001 assembled CDS                                       518   e-148
GSVIVT01006634001 assembled CDS                                       506   e-144
GSVIVT01004278001 assembled CDS                                       476   e-135

>GSVIVT01009070001 assembled CDS
          Length = 370

 Score =  518 bits (1335), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 245/262 (93%), Positives = 254/262 (96%)

Query: 1   YKELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDC 60
           Y+ELAHRVDEALGFM+AAGLTVDHPIMTTTEFWTSHECLLLP+EQSLTR DSTSGLYYDC
Sbjct: 109 YRELAHRVDEALGFMAAAGLTVDHPIMTTTEFWTSHECLLLPFEQSLTREDSTSGLYYDC 168

Query: 61  SAHFLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITI 120
           SAH LWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNK GRIT+
Sbjct: 169 SAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKAGRITV 228

Query: 121 ITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAF 180
           ITRMGAENMRVKLPHLIRA+RRAGQIVTWVSDPMHGNTIKAPCGLKTRPFD+IRAEVRAF
Sbjct: 229 ITRMGAENMRVKLPHLIRAIRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAF 288

Query: 181 FDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAF 240
           FDVH+QEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAF
Sbjct: 289 FDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAF 348

Query: 241 IIAERLRKRRIKSQPSIAPISL 262
           IIAERLRKRRI SQ S+  + L
Sbjct: 349 IIAERLRKRRIGSQLSLNTMGL 370


>GSVIVT01006634001 assembled CDS
          Length = 369

 Score =  506 bits (1302), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 239/258 (92%), Positives = 249/258 (96%)

Query: 1   YKELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDC 60
           Y+ELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTR DSTSGLYYDC
Sbjct: 109 YQELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRKDSTSGLYYDC 168

Query: 61  SAHFLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITI 120
           SAH LWVGERTRQLDGAHVEFLRGVANPLGIKVS+KMDPNELVKL+EILNP NKPGRIT+
Sbjct: 169 SAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPNELVKLVEILNPHNKPGRITV 228

Query: 121 ITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAF 180
           I RMGAENMRVKLPHLIRAVR+AGQIVTWV DPMHGNTIKAPCGLKTRPFD+I AEVRAF
Sbjct: 229 ICRMGAENMRVKLPHLIRAVRQAGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAF 288

Query: 181 FDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAF 240
           FDVH+QEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAF
Sbjct: 289 FDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAF 348

Query: 241 IIAERLRKRRIKSQPSIA 258
           IIAERLRKRR+ +Q  +A
Sbjct: 349 IIAERLRKRRMGTQRLLA 366


>GSVIVT01004278001 assembled CDS
          Length = 368

 Score =  476 bits (1225), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 221/253 (87%), Positives = 239/253 (94%)

Query: 1   YKELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDC 60
           Y ELA RVDEALGFM+AAGLT DHPIM T EFWTSHECL L YEQ+LTR DST+GLYYDC
Sbjct: 109 YTELAQRVDEALGFMAAAGLTTDHPIMNTIEFWTSHECLHLLYEQALTRQDSTTGLYYDC 168

Query: 61  SAHFLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITI 120
           SAH LWVGERTRQLDGAHVEFLRG++NPLGIKVSDKMDP ELVKL EILNP+NKPGR+TI
Sbjct: 169 SAHMLWVGERTRQLDGAHVEFLRGISNPLGIKVSDKMDPKELVKLCEILNPRNKPGRLTI 228

Query: 121 ITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAF 180
           ITRMGA+NMR+KLPHLIRAVR+AG IVTWVSDPMHGNTIKAPCGLKTR FDSIR+E+RAF
Sbjct: 229 ITRMGADNMRIKLPHLIRAVRQAGLIVTWVSDPMHGNTIKAPCGLKTRSFDSIRSELRAF 288

Query: 181 FDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAF 240
           FDVHDQEGSHPGGVHLEMTGQNVTECIGGS+TVTFDDL+SRYHTHCDPRLNASQSLELAF
Sbjct: 289 FDVHDQEGSHPGGVHLEMTGQNVTECIGGSKTVTFDDLNSRYHTHCDPRLNASQSLELAF 348

Query: 241 IIAERLRKRRIKS 253
            IAERLR++R++S
Sbjct: 349 AIAERLRRKRMRS 361