Jatropha Genome Database

JcCA0134721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134721.20 + phase: 1 /TE
         (808 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004252001 assembled CDS                                        92   8e-19
GSVIVT01003599001 assembled CDS                                        87   3e-17
GSVIVT01037358001 assembled CDS                                        84   2e-16
GSVIVT01001301001 assembled CDS                                        62   1e-09
GSVIVT01004123001 assembled CDS                                        60   5e-09
GSVIVT01003937001 assembled CDS                                        59   9e-09
GSVIVT01004860001 assembled CDS                                        58   2e-08
GSVIVT01037622001 assembled CDS                                        56   8e-08
GSVIVT01032339001 assembled CDS                                        52   1e-06

>GSVIVT01004252001 assembled CDS
          Length = 533

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 30/298 (10%)

Query: 210 YLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFL 269
           YLGLP     +   ++  ++  +RK ++ W ++ LSK G+  LIK+   ++P + +S F 
Sbjct: 32  YLGLPLGAKHKAMAMWDGVEARMRKRLALWKRQYLSKGGRITLIKSTLASLPIYQLSFFR 91

Query: 270 IPVSILVELQRLMNFYWWGG-----KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKH 324
           +P  ++  L++L   + WGG     K+  ++WE +C  KE+GGLG R +   N ALLGK 
Sbjct: 92  MPKLVVKRLEKLQRDFLWGGGSMERKIHLINWEVVCTQKESGGLGIRKIDLLNKALLGKW 151

Query: 325 CWRLLHTTNSLXXXXXXX----------XXXPSGNFLGAGVGRNPSFVWRGICAAKDAIC 374
            WR     N                        G F   GVG     VWR I        
Sbjct: 152 IWRFAFEENFFWRKVVGVKYGQLGFGWRTKEARGTF---GVG-----VWRDILKDSSWCW 203

Query: 375 SGFRWRIGDGQSVNVWTELWLLRD--NQFQVPLPILPGVEHIRVSDLILTH-GARAWNLP 431
               +++G G  V+ WT+ W   +  +Q    L  L    +  V+++  +  G   WN+ 
Sbjct: 204 DNIEFKVGKGTKVSFWTDHWCGNEVLSQAFPQLFALAVQRNASVNEMWDSSLGQGGWNIR 263

Query: 432 LIHGLFN---PSIAEIITSI-PLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVDT 485
           L     +    ++ E++  +  L  ++++D +IW     G + ++  Y++++   V T
Sbjct: 264 LSRNFNDWELDALGELLHLLRDLRISLEEDAVIWKEEGRGRFRIRDAYKLLSGSNVIT 321


>GSVIVT01003599001 assembled CDS
          Length = 801

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 49/68 (72%)

Query: 159 IKNILATYEAASGQAVNWQKSGIFFSSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIG 218
           +  I A YE+ SGQA+N+QKSGIFFS N S LD+  ++ +  V  PLN GRYLGLPSLIG
Sbjct: 1   MHTIFAKYESNSGQAINFQKSGIFFSRNVSSLDRDFISNILGVSTPLNTGRYLGLPSLIG 60

Query: 219 RERRRVFS 226
           + +R VF 
Sbjct: 61  KSKRAVFE 68


>GSVIVT01037358001 assembled CDS
          Length = 2456

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 128/289 (44%), Gaps = 32/289 (11%)

Query: 238  GWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGG-----KMR 292
            GW +  LS  G+  LI++    +P + +S F IP S++ +++RL   + W G     +  
Sbjct: 857  GWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPTSVVAKIERLQRDFLWSGIEEGKRNH 916

Query: 293  WLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLG 352
             +SW+ +C  K  GGLGF  +   NLALLGK  WR L   ++L             N   
Sbjct: 917  LVSWDVVCNPKAKGGLGFGKISLRNLALLGKWLWRYLREGSALWHQVILSIYGSHSNGWD 976

Query: 353  AGV-----GRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPI 407
            A        R P   W+ I           R+ +G+G+ + +W +LW   D       P 
Sbjct: 977  ANTLVRWSHRCP---WKAIAQVFQEFSMFTRFVVGNGERILLWEDLW-WGDQSLGSQYPR 1032

Query: 408  LPGV---EHIRVSDLILTHGARAWNLPLIHGLFNPSIAEI---------ITSIPLAANVQ 455
            L  V   ++I +S ++ +    +WN      L +  I ++         +   P  +N +
Sbjct: 1033 LFRVVMDKNIPISLILGSTHPFSWNFNFHRNLSDSEIEDLEGLMRSLDGLHQSPSVSNAR 1092

Query: 456  DDILIWHWTDSGIYSVKSGYRIVASQYVDTEDAWRSRF-WKTLCHFKFR 503
                 W  + SG++S+KS +R + SQ+  +   + S+F W +   FK +
Sbjct: 1093 ----FWPLSYSGLFSIKSFFRAL-SQFSGSLPVFPSKFVWNSQVPFKVK 1136


>GSVIVT01001301001 assembled CDS
          Length = 325

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 224 VFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMN 283
           V+  +++ +RK  + W  + +SK G+  LI +   ++P + MS   +P  + + L+R+  
Sbjct: 160 VWDGVEERMRKKSARWKSQYISKGGRITLIWSTLASMPIYFMSMLSMPRKVRLRLERIQR 219

Query: 284 FYWWGG-----KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRL 328
            + WGG     K+  + W+ +C+ K NGGLG + L   N  LL K  WR 
Sbjct: 220 DFLWGGGALERKLHLVRWDLVCLEKCNGGLGVKSLSILNKTLLCKWSWRF 269


>GSVIVT01004123001 assembled CDS
          Length = 386

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 23/247 (9%)

Query: 249 KEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGG-----KMRWLSWERLCVAK 303
           +  LI++    +P + MS   +P  +   L+++   + WGG     K   + WE +C++K
Sbjct: 74  RTTLIRSTLSNLPIYLMSLLCLPSVVRRRLEKIQRDFLWGGGNLERKPHLVRWEVVCLSK 133

Query: 304 ENGGLGFRHLQSFNLALLGKHCWRLLHTTNSL-XXXXXXXXXXPSGNFLGAGVGRNPSF- 361
           + GGLG ++L   N ALL K  WR  +   +L             G +    V       
Sbjct: 134 KKGGLGVKNLSILNKALLAKWNWRFANEREALWNQVIRGKYGEERGGWSSREVREAHGLG 193

Query: 362 VWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIR------ 415
           +W+GI    + + +   + +G+G+ V  W + W   D+   +  P L  +   +      
Sbjct: 194 LWKGIRMNWELVSNRLVFIVGNGRRVRFWRDKW-CGDSPLCLSFPSLFALTVDKEESVAD 252

Query: 416 VSDLILTHGARAWNLPLIHGLFN-------PSIAEIITSIPLAANVQDDILIWHWTDSGI 468
           V D +   G   WN P     FN        S  E +    +  +V+D +  W  T SG 
Sbjct: 253 VWDSLAEGGWGGWN-PCFLRAFNDWEVEEASSFMERLHRSRVIEDVEDRV-SWTETKSGK 310

Query: 469 YSVKSGY 475
           +SVKS Y
Sbjct: 311 FSVKSLY 317


>GSVIVT01003937001 assembled CDS
          Length = 354

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 116/261 (44%), Gaps = 26/261 (9%)

Query: 263 FCMSSFLIPVSILVELQRLM-NFYWWG---GKMRWL-SWERLCVAKENGGLGFRHLQSFN 317
           + +S F IP  +  +++RL  +F W G   GK  +L SW+ +C  K   GLGF  +   N
Sbjct: 4   YFLSLFKIPALVAAKIERLQRDFLWSGVGEGKRDYLVSWDVVCKLKAKRGLGFGKIVLRN 63

Query: 318 LALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAG-----VGRNPSFVWRGICAAKDA 372
           +ALLGK  WR     ++L             N   A      + R P   W+ I      
Sbjct: 64  VALLGKWLWRYPRKGSALWHQVILSIYGSHSNGWDANTIVKWLHRCP---WKAIAQVFQE 120

Query: 373 ICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGV---EHIRVSDLILTHGARAWN 429
                R+ +GD + +  W +LW   D   +   P L  V   ++I +S ++ +    +WN
Sbjct: 121 FSKFTRFVVGDEERIRFWEDLW-WGDQPLESQYPRLFRVVTDKNILISSILGSTRPLSWN 179

Query: 430 LPLIHGLFNPSIAEI------ITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYV 483
                 L +  I ++      +  + L+++V  D   W+ + SG+++VKS + +  SQ  
Sbjct: 180 FNFRSNLSDFEIEDLEGLMRSLDCLHLSSSVS-DARSWYLSSSGLFTVKSFF-LALSQCS 237

Query: 484 DTEDAWRSRF-WKTLCHFKFR 503
            +   + ++F W +   FK +
Sbjct: 238 GSSPIFLTKFIWNSQVPFKVK 258


>GSVIVT01004860001 assembled CDS
          Length = 1243

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 95/243 (39%), Gaps = 50/243 (20%)

Query: 270 IPVSILVELQRLMNFYWW-----GGKMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKH 324
           +P S+   L++L   + W     G K   + WE +C  KE GGLG R L   N ALLGK 
Sbjct: 1   MPKSVARRLEKLQRDFLWEGANGGKKAHLVKWEVVCADKEKGGLGLRKLACLNKALLGKW 60

Query: 325 CWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWR--------GICAAKDAICSG 376
            WR       +               L A  G+   F WR        G+   K+ I   
Sbjct: 61  IWRFARAKEDIWK-----------KVLEAKYGQE-DFGWRTRKANGVFGVGVWKE-ILKE 107

Query: 377 FRW-------RIGDGQSVNVWTELWLLRDNQFQVPLPILPGV------EHIRVSDL-ILT 422
           F W       ++G G  +  W + W   +    VP    P +       ++ V ++    
Sbjct: 108 FAWCWENMVFKVGKGNKIRFWIDPWCGNN----VPSQSFPNLFSMAAQRNVTVEEMWDQN 163

Query: 423 HGARAWNLPLIHGLFNPSIAEIITSIPLA-----ANVQDDILIWHWTDSGIYSVKSGYRI 477
            G   WNL  +   FN    +++ ++ +        +++  +IW     G++ VK  Y +
Sbjct: 164 FGQGGWNLRFLRA-FNDWELDMVGNLLVEFREHRVTLEEHSVIWKEGGDGLFRVKRAYSV 222

Query: 478 VAS 480
           +AS
Sbjct: 223 LAS 225


>GSVIVT01037622001 assembled CDS
          Length = 571

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query: 34 KVDIFKAYDRVNWCYLQAVMQGLGFSQRWVDLIMLCVSSVKYWVGVNGDEVGPIIPERGL 93
          K+D  KAYD +NW +L  VMQ +GF ++W   I  C+S+  Y + +N   +G      GL
Sbjct: 12 KMDKEKAYDHINWNFLLLVMQKMGFGEKWAGWISWCISTATYSILINDSSMGFFHSTNGL 71

Query: 94 RQGC 97
          R+G 
Sbjct: 72 RKGT 75


>GSVIVT01032339001 assembled CDS
          Length = 235

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 239 WNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGGKM-----RW 293
           W ++ +SK G+   IK++  ++P + +S F +   + + L+++   + WGG M     + 
Sbjct: 2   WRRQYISKGGRLTPIKSMLSSLPIYFISLFQMSRRVRLRLEKIYRNFLWGGGMLGNKPQL 61

Query: 294 LSWERLCVAKENGGLGFRHLQSFNLALLGKHCW 326
           + W+ +C+ K  GGL  R L S N+AL+ K  W
Sbjct: 62  VKWDIVCLDKRKGGLRVRCLNSLNMALICKWIW 94