Jatropha Genome Database

JcCA0134361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134361.10 + phase: 0 /partial
         (407 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009876001 assembled CDS                                       660   0.0  
GSVIVT01018057001 assembled CDS                                       486   e-138

>GSVIVT01009876001 assembled CDS
          Length = 483

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/409 (78%), Positives = 356/409 (87%), Gaps = 4/409 (0%)

Query: 3   MSLTIRLHITLHSTFNLHTNSKTKFTSYSTRIKPKPIYHTNPLIHFVYNKPK----MLNS 58
           MSL+IRLHI+ + + N H  +  + T++ST I+P+PIYH+NPL   +  +         S
Sbjct: 1   MSLSIRLHISSNLSLNFHPQTTIRRTNHSTSIRPRPIYHSNPLAPALLRRAMSAIPSHKS 60

Query: 59  SNPVSVKSSLIXXXXXXXXXXXXXESQRGAKVLEAESMPKVKLNKVDVEWVHVISEGWAS 118
           S+  ++KSSLI             ES+R AK LEAESMPKV L ++D+EWVHVISEGWAS
Sbjct: 61  SSSSTIKSSLIEPDGGALVDRVVPESERAAKALEAESMPKVGLTQIDLEWVHVISEGWAS 120

Query: 119 PLTGFMRENEYLQSLHFNSLRLADGTVVNMSLPIVLAIDDETKESIGSSKNVGLVAPDGG 178
           PL GFMRE+EYLQSLHFN +R+ DGT+VNMSLPIVLAIDDE KE IG+S++VGLV P G 
Sbjct: 121 PLKGFMREDEYLQSLHFNCIRMKDGTIVNMSLPIVLAIDDEAKERIGASQDVGLVGPTGD 180

Query: 179 LIGILRSIEIYKHNKEERIARTWGTTAPGLPYVEEYITPAGNWLIGGDLEVLKPIKYNDG 238
           L+GILRSIEIYKHNKEER+ARTWGTTAPGLPYVEE ITPAGNWLIGGDLEVLKPIKYNDG
Sbjct: 181 LVGILRSIEIYKHNKEERVARTWGTTAPGLPYVEEVITPAGNWLIGGDLEVLKPIKYNDG 240

Query: 239 LDHYRLSPKQLRQEFDRRQADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGYKNPILLLH 298
           LDHYRLSP+QLR+EFD+RQADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGYKNPILLLH
Sbjct: 241 LDHYRLSPQQLRKEFDKRQADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGYKNPILLLH 300

Query: 299 PLGGFTKADDVPLDVRMEQHSKVLEDGVLDPNTTIVAIFPSPMHYAGPTEVQWHAKGRIN 358
           PLGG+TKADDVPLDVRMEQHSKVLEDGVLDP TTIVAIFPSPMHYAGPTEVQWHAKGRIN
Sbjct: 301 PLGGYTKADDVPLDVRMEQHSKVLEDGVLDPETTIVAIFPSPMHYAGPTEVQWHAKGRIN 360

Query: 359 AGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFR 407
           AGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFR
Sbjct: 361 AGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFR 409


>GSVIVT01018057001 assembled CDS
          Length = 358

 Score =  486 bits (1251), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 229/284 (80%), Positives = 252/284 (88%)

Query: 124 MRENEYLQSLHFNSLRLADGTVVNMSLPIVLAIDDETKESIGSSKNVGLVAPDGGLIGIL 183
           MRE+E+LQ+LHFNSLRL DG+ VNMS+PIVLAIDD  K  IG S  V LV      I IL
Sbjct: 1   MRESEFLQTLHFNSLRLDDGSFVNMSVPIVLAIDDAEKHQIGDSTKVALVDSKDNTIAIL 60

Query: 184 RSIEIYKHNKEERIARTWGTTAPGLPYVEEYITPAGNWLIGGDLEVLKPIKYNDGLDHYR 243
            SIEIYKH+KEERIARTWGTTAPGLPYV++ IT +GNWLIGGDLEV++P+KYNDGLD +R
Sbjct: 61  SSIEIYKHHKEERIARTWGTTAPGLPYVDQAITNSGNWLIGGDLEVVEPVKYNDGLDRFR 120

Query: 244 LSPKQLRQEFDRRQADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF 303
           LSP +LR+EF +R ADAVFAFQLRNPVHNGHALLM DTRRRLLEMGYKNP+LLLHPLGG+
Sbjct: 121 LSPAELREEFTKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYKNPVLLLHPLGGY 180

Query: 304 TKADDVPLDVRMEQHSKVLEDGVLDPNTTIVAIFPSPMHYAGPTEVQWHAKGRINAGANF 363
           TKADDVPL  RM+QH KVLEDGVLDP TT+V+IFPSPMHYAGPTEVQWHAK RINAGANF
Sbjct: 181 TKADDVPLGWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANF 240

Query: 364 YIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFR 407
           YIVGRDPAGMGHP EKRDLYD DHGKKVLSMAPGLE+LNILPF+
Sbjct: 241 YIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFK 284