Jatropha Genome Database

JcCA0134311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134311.10 + phase: 2 /partial
         (82 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010321001 assembled CDS                                        92   7e-20
GSVIVT01001846001 assembled CDS                                        89   5e-19

>GSVIVT01010321001 assembled CDS
          Length = 400

 Score = 91.7 bits (226), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 47/52 (90%)

Query: 1   AEGCQQKEHSTQPCRACTLCIARCVQCGRCINDSEYEETFCLELLCSDCWKQ 52
           A+GCQ KE++ Q CRACTLCIARCVQCGRCIND EYEETFCLE LCSDC+KQ
Sbjct: 335 ADGCQVKENAAQVCRACTLCIARCVQCGRCINDGEYEETFCLEWLCSDCFKQ 386


>GSVIVT01001846001 assembled CDS
          Length = 489

 Score = 88.6 bits (218), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 57/83 (68%), Gaps = 3/83 (3%)

Query: 1   AEGCQQKEHSTQPCRACTLCIARCVQCGRCINDSEYEETFCLELLCSDCWKQ-VNCQEEE 59
           +E CQ K  S Q CRACTLCIARC  CGRCIND +YEETFCL+LLC DC+KQ +NCQE +
Sbjct: 396 SESCQGKHQSAQLCRACTLCIARCFHCGRCINDCDYEETFCLDLLCLDCFKQLLNCQERQ 455

Query: 60  DGKISPPKAPAVC--ESSCSFRL 80
           +   +P     +   E+S  F L
Sbjct: 456 EEMGAPSSKHTIFHQETSIPFLL 478