Jatropha Genome Database

JcCA0133521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0133521.10 + phase: 0 /partial
         (263 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021668001 assembled CDS                                       376   e-105
GSVIVT01016871001 assembled CDS                                       106   1e-23
GSVIVT01022917001 assembled CDS                                       103   6e-23
GSVIVT01008461001 assembled CDS                                        94   8e-20
GSVIVT01004121001 assembled CDS                                        91   6e-19

>GSVIVT01021668001 assembled CDS
          Length = 345

 Score =  376 bits (966), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/252 (73%), Positives = 215/252 (85%), Gaps = 4/252 (1%)

Query: 6   RVRGVLSIFNTKLY---ASIRGFSTSPPFSQFENVGFIGLGNMGSRMANNLIKAGYKVTV 62
           RVR +L  F++ ++   +SI  F +S   + FENVGFIGLGNMGSRMANNLI AGYKV V
Sbjct: 5   RVRSLLP-FSSAIHKSVSSIYRFYSSTSSTHFENVGFIGLGNMGSRMANNLIMAGYKVAV 63

Query: 63  HDINHNVIKMFTDMGVPSKQTPFEVAEASDVVITMLPSTSHVLDVYTGPNGLLYGGNIVR 122
           HDINH V++MF + GVP+K+TPFE+AE SDVVITMLPS+SHVLDVYTGPNGL++ GN++R
Sbjct: 64  HDINHEVMRMFAERGVPTKETPFEIAETSDVVITMLPSSSHVLDVYTGPNGLIHDGNLLR 123

Query: 123 PRLLINSSTIDPETSRKLSATVSNFVLTEKKDQWEKPVMLDAPVSGGVLAAEAGTLTFMV 182
           P L I+SSTIDP+TSR+LS  VSN  L ++KD WE P++LDAPVSGGVLAAE GTLTFMV
Sbjct: 124 PMLFIDSSTIDPQTSRRLSVAVSNCGLKQRKDIWETPIILDAPVSGGVLAAETGTLTFMV 183

Query: 183 GGCEEAYLAAKSLFLSMGKNSIYCGGAGTGSAAKICNNLAMAVSMIGVSEALALGQSLGI 242
           GG EEAYLAAKSLFLSMGKN+IYCGGAG GSAAKICNNLAMAVSM+GVSEA ALGQSLGI
Sbjct: 184 GGSEEAYLAAKSLFLSMGKNTIYCGGAGNGSAAKICNNLAMAVSMLGVSEAFALGQSLGI 243

Query: 243 RADPLSKVFNSS 254
            A  L+K+FNSS
Sbjct: 244 AAGTLAKIFNSS 255


>GSVIVT01016871001 assembled CDS
          Length = 343

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 106/217 (48%), Gaps = 12/217 (5%)

Query: 36  NVGFIGLGNMGSRMANNLIKAGYKVTVHDINHNVIKMFTDMGVPSKQTPFEVAEASDVVI 95
            VGF+GLG MGS MA NLIK+G  VTV +   +       +G   K +P EVA + DV  
Sbjct: 51  RVGFLGLGIMGSPMAQNLIKSGCDVTVWNRTKSKCDPLISLGAKYKSSPEEVAASCDVTF 110

Query: 96  TMLPSTSHVLDVYTGPNGLLYGGNIVRPRLLINSSTIDPETSRKLSATVSNFVLTEKKDQ 155
            ML      +DV  G +G   G  I   +  ++ ST+D  TS+ +   +          +
Sbjct: 111 AMLADPESAVDVACGKHGAASG--IGPGKGYVDVSTVDGATSKLIGEHI----------K 158

Query: 156 WEKPVMLDAPVSGGVLAAEAGTLTFMVGGCEEAYLAAKSLFLSMGKNSIYCGGAGTGSAA 215
               + L+APVSG    AE G L F+ GG +  Y     L   MGK+  + G  G G+A 
Sbjct: 159 ATGALFLEAPVSGSKKPAEDGQLIFLTGGDKSLYETVAPLLDIMGKSRFFLGSVGNGAAM 218

Query: 216 KICNNLAMAVSMIGVSEALALGQSLGIRADPLSKVFN 252
           K+  N+ M   M   SE L LG+ +G+  D + +V +
Sbjct: 219 KLVVNMVMGSMMASFSEGLLLGEKVGLDPDVIVEVIS 255


>GSVIVT01022917001 assembled CDS
          Length = 275

 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 107/207 (51%), Gaps = 13/207 (6%)

Query: 36  NVGFIGLGNMGSRMANNLIKAGYKVTVHDINHNVIKMFTDMGVPSKQTPFEVAEASDVVI 95
            VGF+G+G MG+ MA+ ++ AGY +TV+  N +        G     +P  +A  SDVV 
Sbjct: 15  RVGFVGIGVMGAAMASRILAAGYFLTVYARNPSKALTLQSQGAQLADSPASLARQSDVVF 74

Query: 96  TMLPSTSHVLDVYTGPNGLLYGGNIVRPRLLINSSTIDPETSRKLSATVSNFVLTEKKDQ 155
           TML   S V  +  GPNG+L G N     +L+++++  P  +R++      +    +K+ 
Sbjct: 75  TMLGHPSDVRQIVLGPNGILSGLN--PGGVLVDTTSSHPGLAREI------YAAAREKNC 126

Query: 156 WEKPVMLDAPVSGGVLAAEAGTLTFMVGGCEEAYLAAKSLFLSMGKNSIYCGGAGTGSAA 215
           W     +D+PVSGG + A  G L  + GG          L+  MGK + Y G  G G + 
Sbjct: 127 WS----VDSPVSGGDIGARDGKLAILAGGDSGVVEWLTPLYNVMGKGT-YVGAPGCGMSC 181

Query: 216 KICNNLAMAVSMIGVSEALALGQSLGI 242
           KI N + +A +M+G+SE L   +  G+
Sbjct: 182 KIANQMIVAANMLGLSEGLVFAERAGL 208


>GSVIVT01008461001 assembled CDS
          Length = 1509

 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 121/239 (50%), Gaps = 20/239 (8%)

Query: 15  NTKLYASIR-GFSTSPPFSQFENVGFIGLGNMGSRMANNLIKAGYKVTVHDINHNVIKMF 73
           N ++Y+ +  G   +      + VGFIGLG MG  MA +L+K+ + V   D+    +  F
Sbjct: 436 NAEIYSPLELGSQITAKPKTVKRVGFIGLGAMGFGMATSLLKSNFCVLGFDVYKPTLSRF 495

Query: 74  TDMGVPSKQTPFEVAEASDVVITMLPSTSHVLDVYTGPNGLLYGGNIVRPRLLINSSTID 133
            + G    ++P EV++  DV++ M+ + +    V  G  G +                + 
Sbjct: 496 ANAGGLVGESPAEVSKDVDVLVIMVTNEAQAESVLFGDLGAV--------------KVLP 541

Query: 134 PETSRKLSATVS-NFVLTEK---KDQWEKPVMLDAPVSGGVLAAEAGTLTFMVGGCEEAY 189
           P  S  LS+TVS  FV+  +   K++ +   ++DAPVSGGV  A  GTLT +  G +EA 
Sbjct: 542 PGASIILSSTVSPGFVIQLERRLKNENKNLKLVDAPVSGGVKRASMGTLTIIASGTDEAL 601

Query: 190 LAAKSLFLSMG-KNSIYCGGAGTGSAAKICNNLAMAVSMIGVSEALALGQSLGIRADPL 247
            +A S+  ++  K  I  GG G+GSA K+ N L   V +   +EA+A+G  LG+    L
Sbjct: 602 TSAGSVLSALSEKLYIIRGGCGSGSAVKMVNQLLAGVHIAASAEAMAIGARLGLNTRKL 660


>GSVIVT01004121001 assembled CDS
          Length = 291

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 107/228 (46%), Gaps = 18/228 (7%)

Query: 36  NVGFIGLGNMGSRMANNLIKAGYKVTVHDINHNVIKMFTDMGVPSKQTPFEVAEASDVVI 95
            VGF+GLG MG  M+ NLI++G+K+TV +   +      ++G    +TP  V +  +  I
Sbjct: 2   EVGFLGLGIMGKAMSINLIRSGFKLTVWNRTLSKCDELVELGASIGETPAAVVKKCNYTI 61

Query: 96  TMLPSTSHVLDVYTGPNGLLYGGNIVRPRLLINSSTIDPETSRKLSATVSNFVLTEKKDQ 155
            ML   S  L V    +G+L    I   +  I+ ST+  +TS K+S  +     T K   
Sbjct: 62  AMLSDPSVALSVVFDKDGVLE--QICHGKGYIDMSTVGADTSSKISEAI-----TSKGGS 114

Query: 156 WEKPVMLDAPVSGGVLAAEAGTLTFMVGGCEEAYLAAKSLFLSMGKNSIYCGGAGTGSAA 215
           +     L+APVSG    AE G L  +  G +  Y  A   F  MGK S + G  G G+  
Sbjct: 115 F-----LEAPVSGSKKPAEDGQLVILAAGEKALYDEAIPAFDIMGKKSFFLGQVGNGAKM 169

Query: 216 KICNNLAMAVSMIGVSEALALGQSLGIRADPLSKVFNSSLLDVGVGIA 263
           K+  N+ M   M   SE L L    G+    L  V     LD+G GIA
Sbjct: 170 KLVVNMIMGSMMNAFSEGLVLADRSGLNPHTLLDV-----LDLG-GIA 211