Jatropha Genome Database

JcCA0133471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0133471.10 + phase: 2 /pseudo/partial
         (558 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007978001 assembled CDS                                       435   e-122
GSVIVT01003228001 assembled CDS                                       309   2e-84

>GSVIVT01007978001 assembled CDS
          Length = 524

 Score =  435 bits (1118), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/462 (48%), Positives = 293/462 (63%), Gaps = 56/462 (12%)

Query: 98  DSGFDEESCLSRYQSFVYRKHSPHKPSPYLLSKLRSYEILHKRCGPYTGSYNQTLKAINS 157
           D+GF+E SCLSRYQS +YRK   HKPS YLLSKLRSYE LHKRCGPYT SYN+TLK +  
Sbjct: 104 DAGFNERSCLSRYQSALYRKELLHKPSSYLLSKLRSYEALHKRCGPYTESYNRTLKQLQL 163

Query: 158 VNISSPTDCNYIVWTATAGLGNRILSVSAAFLYAVLTNRVLLVEYETDMANLFCEPFPNT 217
                 +DCNY+VW + +GLGNRIL++++AFLYA+LTNRVLLV+   DM +LFCEPFP  
Sbjct: 164 GQHMEQSDCNYLVWISFSGLGNRILTLASAFLYAILTNRVLLVDPGADMPDLFCEPFPEV 223

Query: 218 SWLLPQDFLMKSEFRKLNHQYPHIFQNLIRQK-IINASTELLPSVVYILLA---AGKDKI 273
           SWLLP DF +K+EF   + + P  +  +++ K + ++S  +LP  VY+ L       DK+
Sbjct: 224 SWLLPLDFPLKNEFNSFDQKSPFCYGKMLKNKTLTDSSWSILPPYVYLHLVHDYDDHDKM 283

Query: 274 FYCEEQQQLVQKIPWLILKSDEYFIPSLFLIPSFKQELDSMFPDKETVFHFLGRYLFNPS 333
           F+C + Q  ++KIP LI+K+D YF+PSLFLIPSF+QEL                      
Sbjct: 284 FFCNQDQSFLRKIPCLIIKTDNYFVPSLFLIPSFEQEL---------------------- 321

Query: 334 NEAWGLITRFYEAYLSKADQKIGMQIRVFNPQATPFQILTDQILACSQQENLLAQVDENR 393
                                      +F+    PFQ + DQI+AC+  ENLL +++   
Sbjct: 322 ---------------------------IFDTGIGPFQHVLDQIIACTMTENLLPEINMRE 354

Query: 394 TAGSPLKIGTSSKSILIASLYSEFYEEIRNKYWRFPTRTGESIGVYQLSHEENQRFGDNM 453
              S       SK++L+ SL + ++E++RN YW  PT TGE IGVYQ SHEE Q+     
Sbjct: 355 PVVSSYG-HKKSKAVLMTSLSAGYFEKVRNMYWEHPTVTGEVIGVYQPSHEEYQQTEKQN 413

Query: 454 HNMKAWVEINLLSMSNVLVTSPRSTFGYVAQGLGGLKPWILKKPEDWKTNSSACGLAMSI 513
           HN KAW E+ LLS+++VLVTS  STFGYVAQGLGGLKPWIL KPE+       C  AMS+
Sbjct: 414 HNRKAWAEMYLLSLTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENQTAPDPPCRRAMSM 473

Query: 514 EPCFHDPPLYGCKSKVKVD--SIVPHIKHCEDVPGGLKLFSN 553
           EPCFH PP Y CK+K  VD  ++VPH++HCED+  GLKL  +
Sbjct: 474 EPCFHAPPFYDCKAKKGVDTGALVPHVRHCEDMSWGLKLVDD 515


>GSVIVT01003228001 assembled CDS
          Length = 474

 Score =  309 bits (792), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/247 (59%), Positives = 193/247 (78%), Gaps = 3/247 (1%)

Query: 99  SGFDEESCLSRYQSFVYRKHSPHKPSPYLLSKLRSYEILHKRCGPYTGSYNQTLKAINSV 158
           +GF E+SCLSRYQS +YRK SP+KPS YLLS+LR YE LHK CGP+T SY +T+K + S 
Sbjct: 91  AGFGEKSCLSRYQSALYRKISPYKPSSYLLSRLRKYEDLHKHCGPHTKSYRKTIKLLKSG 150

Query: 159 NISSPTDCNYIVWTATAGLGNRILSVSAAFLYAVLTNRVLLVEYETDMANLFCEPFPNTS 218
           +   PTDCNY+VW + +GLGNRIL++++AFLYA+LTNRVLLV+   DMA+LFCEPFP  S
Sbjct: 151 HSVGPTDCNYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGKDMADLFCEPFPEKS 210

Query: 219 WLLPQDFLMKSEFRKLNHQYPHIFQNLIRQKIINASTELLPSVVYILLA---AGKDKIFY 275
           WLLP DF +  +F  +N + PH F  +++  IIN+STE  P  +YI L+      DK+F+
Sbjct: 211 WLLPLDFPLLPKFNSINKESPHCFGKMLKNNIINSSTEQPPPFLYIYLSHDYGDHDKLFF 270

Query: 276 CEEQQQLVQKIPWLILKSDEYFIPSLFLIPSFKQELDSMFPDKETVFHFLGRYLFNPSNE 335
           C+++Q L+ K+PWLI+K++ YF+PSLFL+PSF+QEL  +FP+KET FH LGRYLF+PSN+
Sbjct: 271 CDQEQTLLGKVPWLIMKTNNYFVPSLFLMPSFEQELSKLFPEKETTFHHLGRYLFHPSNQ 330

Query: 336 AWGLITR 342
            WGLITR
Sbjct: 331 VWGLITR 337



 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/135 (54%), Positives = 90/135 (66%), Gaps = 2/135 (1%)

Query: 422 RNKYWRFPTRTGESIGVYQLSHEENQRFGDNMHNMKAWVEINLLSMSNVLVTSPRSTFGY 481
           RN YW     +GE + VYQ SHEE Q+     HN KAW E+ LLS +  L+TS  STFGY
Sbjct: 337 RNMYWEQSAMSGEVVSVYQPSHEEVQQSEKQGHNRKAWAEMYLLSTTEALITSAWSTFGY 396

Query: 482 VAQGLGGLKPWILKKPEDWKTNSSACGLAMSIEPCFHDPPLYGCKSKVKVD--SIVPHIK 539
           VAQGLGG+ PWIL KP++       CG AMS+EPCFH PP Y CK+K  VD  ++VPH++
Sbjct: 397 VAQGLGGVTPWILYKPQNRTAPDPPCGRAMSMEPCFHAPPFYDCKAKTGVDTGALVPHVR 456

Query: 540 HCEDVPGGLKLFSNY 554
           HCED+  GLKL   +
Sbjct: 457 HCEDMSWGLKLVGRH 471