Jatropha Genome Database

JcCA0133161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0133161.10 + phase: 0 /partial
         (299 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036192001 assembled CDS                                       248   2e-66
GSVIVT01027796001 assembled CDS                                       227   6e-60
GSVIVT01027798001 assembled CDS                                       219   1e-57

>GSVIVT01036192001 assembled CDS
          Length = 316

 Score =  248 bits (633), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/266 (51%), Positives = 172/266 (64%), Gaps = 6/266 (2%)

Query: 27  GRLWIHAASKVPEEETIKAMEDFYREIYALNGITDIKFPEHYPVSRXXXXXXXXXXXXXX 86
           GRLWIHAASKVP+E T+KAME+FY+EIYA++GI D+KFPE+YPVSR              
Sbjct: 42  GRLWIHAASKVPDEATVKAMEEFYKEIYAVDGIYDLKFPENYPVSRLLGCVQVVGCSKRE 101

Query: 87  XXASWEAIPVGARLEGQTDFCWLCEHPQKLLVPFEMRGYQRVYNLEKKIYEAAVRGLIPV 146
             A W+ +  G RLE  TDFCWLCE PQKLLVPFEMRG Q VY+LE+KIYEAAVRGL PV
Sbjct: 102 ELACWKEVSEGVRLEALTDFCWLCEQPQKLLVPFEMRGNQGVYDLERKIYEAAVRGLAPV 161

Query: 147 KGPMPVKFPLPNPRDPFSLRPGSV-AMLPE-KASEVEKSSTLTXXXXXXXXXXTQFSKKD 204
           + P+P+KFPLPNPR+PFSL+PGS+ A  PE KA+E+EKSSTL+          TQFSKKD
Sbjct: 162 ESPLPIKFPLPNPRNPFSLKPGSIFARFPESKATEMEKSSTLSSAIAGAQAAATQFSKKD 221

Query: 205 Q-YFLXXXXXXXXXXXXXXDQAKDKLLEQHNVPQNNFYEGSNDESSVSNEMEQSN-GIKD 262
           Q                   Q + K  E +  P  NF +GSN  + +  +  QS+    D
Sbjct: 222 QSSHNDAIQNRNIINAKRIGQFESKSWENNKSPAGNFNKGSNRGTQLFVKQGQSSYSEHD 281

Query: 263 VESSSHSRT-RADAKQ-LRAPAKVLS 286
              SSH++  RA + Q LR P+K+ +
Sbjct: 282 GRISSHNQLPRAGSNQHLRPPSKIFT 307


>GSVIVT01027796001 assembled CDS
          Length = 264

 Score =  227 bits (578), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 108/182 (59%), Positives = 129/182 (70%), Gaps = 2/182 (1%)

Query: 27  GRLWIHAASKVPEEETIKAMEDFYREIYALNGITDIKFPEHYPVSRXXXXXXXXXXXXXX 86
           GRLWIHAASKVP+ +TIKAME+FYREIYA+NGI D+KFPEHYPVSR              
Sbjct: 35  GRLWIHAASKVPDSDTIKAMENFYREIYAVNGIADLKFPEHYPVSRLLGCIEVVGCVKCE 94

Query: 87  XXASWEAIPVGARLEGQTDFCWLCEHPQKLLVPFEMRGYQRVYNLEKKIYEAAVRGLIPV 146
             A W+ +P G RLE QT+FCWLCE PQKL++PFEMRGYQR+YNLE+KIYEAAVRGL PV
Sbjct: 95  ELACWKEVPEGVRLEAQTEFCWLCEQPQKLIIPFEMRGYQRIYNLERKIYEAAVRGLRPV 154

Query: 147 KGPMPVKFPLPNPRDPFSLRPGSVAMLPE--KASEVEKSSTLTXXXXXXXXXXTQFSKKD 204
           + P+PVKF LP P+DP SL+PG +    +  KA+E +K   L           TQFSK D
Sbjct: 155 QAPLPVKFLLPEPQDPLSLKPGLLVSCFDGSKAAEDKKPEGLLAAIAGARAAATQFSKND 214

Query: 205 QY 206
            +
Sbjct: 215 NH 216


>GSVIVT01027798001 assembled CDS
          Length = 234

 Score =  219 bits (557), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 98/145 (67%), Positives = 115/145 (79%)

Query: 27  GRLWIHAASKVPEEETIKAMEDFYREIYALNGITDIKFPEHYPVSRXXXXXXXXXXXXXX 86
           GRLWIHAASKVP+ +TIKAME+FYREIYA+NGI D+KFPEHYPVSR              
Sbjct: 42  GRLWIHAASKVPDSDTIKAMENFYREIYAVNGIADLKFPEHYPVSRLLGCVEVVGCVKCE 101

Query: 87  XXASWEAIPVGARLEGQTDFCWLCEHPQKLLVPFEMRGYQRVYNLEKKIYEAAVRGLIPV 146
             A W+ +P G RLE QT+FCWLCE PQKL++PFEMRGYQR+YNLE+KIYEAAVRGL PV
Sbjct: 102 ELACWKEVPEGVRLEAQTEFCWLCEQPQKLIIPFEMRGYQRIYNLERKIYEAAVRGLRPV 161

Query: 147 KGPMPVKFPLPNPRDPFSLRPGSVA 171
           + P+PVKF LP P+DP SL+PGS+ 
Sbjct: 162 QAPLPVKFLLPEPQDPLSLKPGSLV 186