Jatropha Genome Database

JcCA0132221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0132221.10 + phase: 0 /partial
         (420 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025182001 assembled CDS                                       772   0.0  

>GSVIVT01025182001 assembled CDS
          Length = 740

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/444 (83%), Positives = 400/444 (90%), Gaps = 24/444 (5%)

Query: 1   MATGTVPASFTGLKARESSLGFGKSMDFVRVCDLKRIKSGRKKISMIRNSNPGPEMVELQ 60
           MATG+VP SF+GL+  + +LG  KS+DFVRV D++RI  GR+K+S+IRNSNP  ++ ELQ
Sbjct: 1   MATGSVPTSFSGLRRMDCNLGSSKSVDFVRVSDMQRITYGRRKVSVIRNSNPSSDIAELQ 60

Query: 61  PASEGSPLLVPRQKYCESVHKTVRRKTRTVMVGNVALGSDHPIRVQTMTTSDTKDVAGTV 120
            +SEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVALGS+HPIR+QTMTT+DTKDVA TV
Sbjct: 61  ASSEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVAATV 120

Query: 121 EQVMRIADQGANLVRITVQGKREADAAFEIKNTLVQKNYNIPLVADIHFAPTVALRVAEC 180
           EQVM+IAD+GA++VRITVQGKREADA FEIKN+LVQKNYNIPLVADIHFAP+VALRVAEC
Sbjct: 121 EQVMKIADKGADIVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 180

Query: 181 FDKIRVNPGNFADRRAQFEKLEYTDEDYQKELEHIEQVFTPLVEKCKKYGRAMRIGTNHG 240
           FDKIRVNPGNFADRRAQFEKLE+TDEDYQKELEHIEQVFTPLVEKCKKYGRAMRIGTNHG
Sbjct: 181 FDKIRVNPGNFADRRAQFEKLEFTDEDYQKELEHIEQVFTPLVEKCKKYGRAMRIGTNHG 240

Query: 241 SLSDRIMSYYGDSPRG------------------------NASNPVIMVQAYRLLVAEMY 276
           SLSDRIMSYYGDSPRG                         ASNP+IMVQAYRLLVAEMY
Sbjct: 241 SLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPIIMVQAYRLLVAEMY 300

Query: 277 VQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLA 336
           VQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRLA
Sbjct: 301 VQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLA 360

Query: 337 NLGMRASAIQQGVAPFEEKHRHYFDFQRRSGQLPVQKEGEEVDYRGVLHRDGSVLMSVSL 396
           NLGM+AS IQQGVAPFEEKHRHYFDFQRR+GQLPVQKEGEEVDYRGVLHRDGSVLMSVSL
Sbjct: 361 NLGMKASDIQQGVAPFEEKHRHYFDFQRRTGQLPVQKEGEEVDYRGVLHRDGSVLMSVSL 420

Query: 397 DQLKAPELLYKSLAAKLVVGMPLR 420
           DQLK PEL YKSLAAKLV+GMP +
Sbjct: 421 DQLKTPELFYKSLAAKLVIGMPFK 444