Jatropha Genome Database

JcCA0131991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0131991.10 - phase: 0 /partial
         (353 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017760001 assembled CDS                                       268   2e-72
GSVIVT01027978001 assembled CDS                                       178   4e-45
GSVIVT01007963001 assembled CDS                                       172   3e-43

>GSVIVT01017760001 assembled CDS
          Length = 427

 Score =  268 bits (686), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 119/248 (47%), Positives = 173/248 (69%), Gaps = 5/248 (2%)

Query: 88  YSIDSSVKNWDVKRKEWL----NFHPSFASGSSNRILLVTGSQPFACKNPIGDNLLLRFF 143
           YS+   + +WD +R EWL    NF P+F   +  R+LLVTGS P  C+NP+GD+ LL+  
Sbjct: 70  YSLGPKISDWDEQRAEWLRKNPNF-PNFIGPNKPRVLLVTGSSPKPCENPVGDHYLLKAI 128

Query: 144 KNKVDYCRLHGYDIFYNNVLLHPNMTSFWAKYPIVKAAMLAHPETEWIWWVDSDAVFTDM 203
           KNK+DYCRLHG +IFYN  LL   M  FWAK P+++  +L+HPE E++WW+DSDA+FTDM
Sbjct: 129 KNKIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEIEFLWWMDSDAMFTDM 188

Query: 204 EFKIPLEKYKDHNLVVRGWPSLIYKKQSWTSLNAGVFLIRNCEWSMNFLDAWVNMGPQTP 263
            F++P E+YKDHN V+ GW  ++Y +++W  LN G FL+RNC+W+++ LDAW  MGP+  
Sbjct: 189 AFEVPWERYKDHNFVMHGWNEMVYDQKNWIGLNTGSFLLRNCQWALDILDAWAPMGPKGK 248

Query: 264 NYDKWGQIQRSTFKDKMIPEADDQAALVYLLLKEKEKWGDKIYIEEDYDLQTYWLEAVQD 323
              + G+I     KD+ + EADDQ+A+VYLL  +++ WGDK+Y+E  Y L  YW   V  
Sbjct: 249 IRTEAGKILTRELKDRPVFEADDQSAMVYLLATQRDNWGDKVYLESAYYLHGYWGILVDR 308

Query: 324 YDKITQDY 331
           Y+++ +++
Sbjct: 309 YEEMIKNH 316


>GSVIVT01027978001 assembled CDS
          Length = 382

 Score =  178 bits (451), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 110/155 (70%), Gaps = 5/155 (3%)

Query: 88  YSIDSSVKNWDVKRKEWL----NFHPSFASGSSNRILLVTGSQPFACKNPIGDNLLLRFF 143
           YS+   + +WD +R  WL    NF P+F   +  R+LLVTGS P  C+NP+GD+ LL+  
Sbjct: 104 YSLGPKISDWDEQRSTWLEQNPNF-PNFIGPNKPRVLLVTGSSPKPCENPVGDHYLLKSI 162

Query: 144 KNKVDYCRLHGYDIFYNNVLLHPNMTSFWAKYPIVKAAMLAHPETEWIWWVDSDAVFTDM 203
           KNK+DYCRLHG +IFYN  LL   M  FWAK P+++  +L+HPE E++WW+DSDA+FTDM
Sbjct: 163 KNKIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDM 222

Query: 204 EFKIPLEKYKDHNLVVRGWPSLIYKKQSWTSLNAG 238
            F++P E+YKD+N V+ GW  ++Y +++W  LN G
Sbjct: 223 AFELPWERYKDYNFVMHGWNEMVYDQKNWIGLNTG 257


>GSVIVT01007963001 assembled CDS
          Length = 294

 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 104/137 (75%)

Query: 169 TSFWAKYPIVKAAMLAHPETEWIWWVDSDAVFTDMEFKIPLEKYKDHNLVVRGWPSLIYK 228
             +WAK P+++  ML+HPE EWIWW+DSDA+FTDM F+IPL KY ++NLVV G+P L++ 
Sbjct: 71  AGYWAKLPLIRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLSKYDNYNLVVHGYPDLMFN 130

Query: 229 KQSWTSLNAGVFLIRNCEWSMNFLDAWVNMGPQTPNYDKWGQIQRSTFKDKMIPEADDQA 288
           ++SW +LN G FL RNC+WS++ LDAW  MGP+ P  D+ G+I  +  K +   EADDQ+
Sbjct: 131 QKSWIALNTGSFLFRNCQWSLDLLDAWAPMGPKGPIRDEAGKILTANLKGRPAFEADDQS 190

Query: 289 ALVYLLLKEKEKWGDKI 305
           AL+YLL+ +K++W DK+
Sbjct: 191 ALIYLLISKKDEWMDKM 207