Jatropha Genome Database

JcCA0131921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0131921.10 + phase: 0 /pseudo
         (339 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032673001 assembled CDS                                       301   4e-82

>GSVIVT01032673001 assembled CDS
          Length = 559

 Score =  301 bits (770), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 174/314 (55%), Positives = 205/314 (65%), Gaps = 24/314 (7%)

Query: 10  PGSDSKEIGEKRSSGELGEKQESAPKRIKMRDLHSVLRSEVHSEISTHHSKEEEANDQLQ 69
           P SDSK + EKRS  ELGE+ E A KR+KMRDL SVLRSE      T  SK + AN    
Sbjct: 9   PRSDSKVMREKRSGEELGERSEMARKRVKMRDLDSVLRSEDIDTNYTKSSKTKGAN---- 64

Query: 70  FGEEMSQITSVPITLDPDASELGRTSRTVLSVEVNPATRPLDLNSEAYVADSSAGHGSPE 129
            G+EMSQ+T VP+T+  DA+      R +L     P  R LDLN++   A   A   +  
Sbjct: 65  -GQEMSQVTEVPVTMASDAAHEATKIRDML-----PPQRQLDLNAKVCSARKLACDVTSA 118

Query: 130 GTEACNKVSLLKQHNREHDYKRVTSRGIGLDLNAEDVTSSMNQELLSTSKNHDQMKSRGD 189
             E  NK+  L +H+ EHD   VTSRGIGLDLN+EDV SS+NQ+   + K  D++KS   
Sbjct: 119 CVEGNNKLHPLTKHDMEHDPNFVTSRGIGLDLNSEDVCSSVNQDPFYSYKKRDRVKSPDG 178

Query: 190 ASECGSTTGPAEGKDPLKVWKEMKQNXXXXXXXXXXXXXXXXXXXXHGGIPMPKQRGRKS 249
            SEC S+TGP E KDP+KVWKEMKQN                    HGGIP+PKQR RK+
Sbjct: 179 VSECASSTGPLEEKDPMKVWKEMKQNGFLSST--------------HGGIPVPKQRARKN 224

Query: 250 KNDVLKKKMELAKKEQVDRFTKIAAPSGLLNGLNPGIINHVRNRKQVHSIIEALVRSEKQ 309
           K DV+KKK+ELAK+EQVDRFTKIAAPSGLLN LNPGIINHVRN KQVHSIIEALVRSE+ 
Sbjct: 225 KQDVIKKKIELAKREQVDRFTKIAAPSGLLNELNPGIINHVRNSKQVHSIIEALVRSEQL 284

Query: 310 ENNCTEAKQDSHLK 323
           EN    +KQ SH K
Sbjct: 285 ENGHAGSKQASHSK 298