Jatropha Genome Database

JcCA0131361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0131361.10 - phase: 2 /TE/pseudo/partial
         (557 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014094001 assembled CDS                                        84   2e-16
GSVIVT01015587001 assembled CDS                                        64   2e-10
GSVIVT01008224001 assembled CDS                                        61   1e-09
GSVIVT01017364001 assembled CDS                                        60   3e-09

>GSVIVT01014094001 assembled CDS
          Length = 677

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 96/224 (42%), Gaps = 24/224 (10%)

Query: 334 KKKWLSYFKNIPPLYLVAIVFDPRCRMDVLCDYLTIYYDVLNLDVEDNVNINVLVHEVKQ 393
           K K+  Y+        VA++ DPR +M ++  Y   Y  +   D  D +       +V  
Sbjct: 460 KAKFDKYWSKCSLALAVAVILDPRFKMKLVEYY---YPQIYGTDAADRIK------DVSD 510

Query: 394 NIMQLYNEFXXXXXXXXXXXXXXXXNIPQFSTQ---RVSGVDVAQQVLLQRQKRTRESSS 450
            I +L+N +                ++P  S     R+ G D       Q Q      + 
Sbjct: 511 GIKELFNVYCSTSASLHQGVALPGSSLPSTSNDSRDRLKGFDKFIHETSQNQ------NI 564

Query: 451 ISEFDNYLTTSFEFSDNYADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAF 510
           +S+ D YL     F  N    DF IL+WW      +PILS++ + +L  P+STVA E  F
Sbjct: 565 VSDLDKYLEEPV-FPRN---CDFHILNWWKVQKPRYPILSMMVRDVLGIPMSTVAPEVVF 620

Query: 511 SQGGNILDKTRSRMTPDSLEAQACVDDW--TKAELRAQENPKEN 552
           S G  +LD  RS + PD+ +A  C  DW  T  E   Q +P + 
Sbjct: 621 STGARVLDHYRSSLNPDTRQALICTQDWLQTGLEEPNQSSPHQT 664


>GSVIVT01015587001 assembled CDS
          Length = 839

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 35/212 (16%)

Query: 340 YFKNIPPLYLVAIVFDPRCRMDVLC-DYLTIYYDVLNLDVEDNVNINVLVHEVKQNIMQL 398
           Y+K+   +  +A+  DPR +M ++   +  IY D               +  V + + +L
Sbjct: 546 YWKDCGLVLAIAVAMDPRFKMKLVEFSFPKIYGDEA---------APTCIRVVDEGLHEL 596

Query: 399 YNEFXXXXXXXXXXXXXXXXNIPQFSTQRVSGVDVAQQVLLQRQKRTRESSSISEFDNYL 458
           + E+                 + + +   + G D +Q  LL        S+ +S+FD Y+
Sbjct: 597 FLEYVALPLPLTPTY------VDEGNAGSMKGEDHSQGGLLS-------SNGLSDFDVYI 643

Query: 459 --TTSFEFS---DNYADA-------DFPILDWWSRHANTFPILSLLAKQILAAPVSTVAV 506
             T+S +     D Y +        +F +L WW  +   +P LS +A+ IL+ PVS+VAV
Sbjct: 644 LETSSQQMKSELDQYLEESVLPRVHEFDLLGWWKLNKLKYPTLSKMARDILSIPVSSVAV 703

Query: 507 EQAFSQGGNILDKTRSRMTPDSLEAQACVDDW 538
           E  +   G  +D+ R+ + P+++EA  C  DW
Sbjct: 704 ESIYDTVGKEMDEYRNSLRPETVEALICAKDW 735


>GSVIVT01008224001 assembled CDS
          Length = 680

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 8/124 (6%)

Query: 423 FSTQRVS-GVDVA-QQVLLQRQKRTRESSSISEFDNYLTTSFEFSDNYADADFPILDWWS 480
           +S Q +  G  V+  + + ++++R   S++  E   YL      S+  A     +L+WW 
Sbjct: 530 YSAQEIEDGASVSFAEEIARKKRRVSMSTATDELTQYL------SEPPAPIPTDVLEWWK 583

Query: 481 RHANTFPILSLLAKQILAAPVSTVAVEQAFSQGGNILDKTRSRMTPDSLEAQACVDDWTK 540
            +   +P LS +A+  LA   ++VA E+ F   G+ +DK R  M  DS +A  C+  WT 
Sbjct: 584 VNTTRYPRLSTMARDFLAVQATSVAPEEVFCGKGDEMDKQRFSMPHDSTQALLCIRSWTH 643

Query: 541 AELR 544
             ++
Sbjct: 644 GGIK 647


>GSVIVT01017364001 assembled CDS
          Length = 295

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 452 SEFDNYLTTSFEFSDNYADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAFS 511
           SE D YL  S          DF +L WW  +   +P LS +A  IL+ P++TV  +  F 
Sbjct: 193 SELDQYLDESLMPRSQ----DFDVLAWWKLNKLKYPTLSRMASDILSIPITTVGPDNVFD 248

Query: 512 QGGNILDKTRSRMTPDSLEAQACVDDW 538
             G  +D  RS + P +LEA  C  DW
Sbjct: 249 TVGRKIDSYRSSLRPLTLEALICAKDW 275