Jatropha Genome Database

JcCA0130881.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0130881.20 + phase: 0 /partial
         (202 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008711001 assembled CDS                                       355   6e-99

>GSVIVT01008711001 assembled CDS
          Length = 731

 Score =  355 bits (912), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 169/202 (83%), Positives = 185/202 (91%), Gaps = 1/202 (0%)

Query: 1   MGSLSAINGPLQYPIARRDESVVDDYHGVKVADPYRWLEDPDAEEVKDFVEKQVKLTESV 60
           MGS+ A    L+YP+ARRDESVVDDYHGV ++DPYRWLEDPDA+EVK+FVEKQVKLT+SV
Sbjct: 1   MGSVGASGESLKYPLARRDESVVDDYHGVLISDPYRWLEDPDAQEVKEFVEKQVKLTDSV 60

Query: 61  LKSCDVREKIREKITKLFDHPRYDAPFRRGDKYFYFHNTGLQAQNVLYVQDSLDGEPEVL 120
           L++CD REK+RE ITKLFDHPR+DAPFRRGDKYFYFHNTGLQAQ VLYVQDSLDG+ EVL
Sbjct: 61  LQTCDTREKLRETITKLFDHPRFDAPFRRGDKYFYFHNTGLQAQKVLYVQDSLDGKAEVL 120

Query: 121 LDPNALSEDGTVSLNTLSVSEDAKYLAYGLSSSGSDWVTIKVMRVNDKKVEADTLSWGVK 180
           LDPN LSEDGTVSLNT +VSEDAKYLAYGLSSSGSDWVTIKVMRV DK+VE DTLSW VK
Sbjct: 121 LDPNGLSEDGTVSLNTCAVSEDAKYLAYGLSSSGSDWVTIKVMRVEDKRVETDTLSW-VK 179

Query: 181 FSGIAWTHDSKGFFYSRYPPPK 202
           FSGI+WTHDSKGFFY RYP PK
Sbjct: 180 FSGISWTHDSKGFFYCRYPAPK 201