Jatropha Genome Database

JcCA0130881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0130881.10 - phase: 0 
         (335 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023897001 assembled CDS                                       374   e-104
GSVIVT01034063001 assembled CDS                                       285   2e-77
GSVIVT01016434001 assembled CDS                                       278   4e-75
GSVIVT01026930001 assembled CDS                                       245   3e-65
GSVIVT01015369001 assembled CDS                                       243   8e-65
GSVIVT01017070001 assembled CDS                                       216   1e-56
GSVIVT01036908001 assembled CDS                                       209   1e-54

>GSVIVT01023897001 assembled CDS
          Length = 587

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/333 (60%), Positives = 230/333 (69%), Gaps = 2/333 (0%)

Query: 1   METVSSEEELDQLSERCEFDXXXXXXXXXXXXXXXXXXCPHYDHQGASTSFTSSPLTGPQ 60
           M +VSSEE +D  S+RC                     C  YD +GAS+S TSSPL    
Sbjct: 1   MGSVSSEEGVDDQSDRC--GSYSLSADVSESESCSSFSCRRYDGEGASSSMTSSPLACRP 58

Query: 61  FHDGFNSPPPLPIMLPVVSGRHVTIPTKGAVKPDTGLSEVEMMKERFAKLLLGEDMSGRG 120
                + P   P+MLPV+ GR V +  +   K +T LSE EMMKERFAKLLLGEDMSG G
Sbjct: 59  VVGNSSFPVGPPLMLPVIGGRDVVVWGEKPEKRETDLSEAEMMKERFAKLLLGEDMSGGG 118

Query: 121 NGVCTALAISNAITNLSASVFGEQWKLEPLAQPKKSMWHREMEWLLCVSNSIVELVPSMQ 180
            GVCTALAISNAITNLSA+VFGE W+LEPLA  KK+MW REMEWLLCVS+SIVELVPS+Q
Sbjct: 119 KGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWCREMEWLLCVSDSIVELVPSIQ 178

Query: 181 DFPSGATFEVMVPRPRSDLHVNLPALKKLDAMLLSILDGFCNSDFSYVDSKVMVAVGDET 240
            FP G T+EVM  RPRSDL++NLPALKKLDAMLLS+LDGFC ++F YVD  ++VA  D  
Sbjct: 179 QFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLLSMLDGFCETEFWYVDRGIIVAEADNH 238

Query: 241 KXXXXXXXXXXXXINQEEKCWLPFPKVPRNGLSEDTRKRLQQCRECTNQILKAAMAINNS 300
                        I QEEK WLP PKVP NGLSED RKRLQQCR+CTNQILKAAMAIN+S
Sbjct: 239 DAYPLSASSGRPSIRQEEKWWLPCPKVPPNGLSEDARKRLQQCRDCTNQILKAAMAINSS 298

Query: 301 VLSEMEIPNAYLESLPKVWNTPCGMKFYFCTTS 333
           VL+EMEIP AYLE+LPK      G   Y   T+
Sbjct: 299 VLAEMEIPTAYLETLPKNGKACLGDIIYRYITA 331


>GSVIVT01034063001 assembled CDS
          Length = 1231

 Score =  285 bits (729), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 142/242 (58%), Positives = 176/242 (72%), Gaps = 6/242 (2%)

Query: 92  KPDTGLSEVEMMKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSASVFGEQWKLEPLA 151
           K  + +S++EMMKERF+KLLLGEDMSG GNGVCTALAISNAITNL A++FG+ W+LEPL 
Sbjct: 725 KQGSTISDIEMMKERFSKLLLGEDMSGCGNGVCTALAISNAITNLCATLFGQLWRLEPLP 784

Query: 152 QPKKSMWHREMEWLLCVSNSIVELVPSMQDFPSGATFEVMVPRPRSDLHVNLPALKKLDA 211
             KK+MW REMEWLLCVS+ IVEL+PS Q FP G+  EVM  RPRSDL++NLPAL+KLD 
Sbjct: 785 AEKKAMWRREMEWLLCVSDHIVELIPSWQTFPDGSKLEVMTCRPRSDLYINLPALRKLDN 844

Query: 212 MLLSILDGFCNSDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQEEKCWLPFPKVPRNG 271
           MLL +LD F +++F YVD  ++    D +               QEEK WLP P+VP  G
Sbjct: 845 MLLEVLDSFEDTEFWYVDQGILAPDTDGSSSFRRPLQ------RQEEKWWLPVPRVPPGG 898

Query: 272 LSEDTRKRLQQCRECTNQILKAAMAINNSVLSEMEIPNAYLESLPKVWNTPCGMKFYFCT 331
           L E++RK+LQ  R+CTNQILKAAMAIN++ L+EMEIP +YLE LPK   +  G   +   
Sbjct: 899 LHENSRKQLQHKRDCTNQILKAAMAINSTALAEMEIPESYLEVLPKNGKSSLGDLIHRYV 958

Query: 332 TS 333
           TS
Sbjct: 959 TS 960



 Score =  254 bits (648), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 130/237 (54%), Positives = 161/237 (67%), Gaps = 6/237 (2%)

Query: 97  LSEVEMMKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSASVFGEQWKLEPLAQPKKS 156
           +SEVEMMK RF++LLLGEDMSGRG GVCTALAIS  ITNL A++FG+ WKLEPL   KK+
Sbjct: 174 ISEVEMMKARFSRLLLGEDMSGRGIGVCTALAISKGITNLYATLFGKIWKLEPLDPMKKA 233

Query: 157 MWHREMEWLLCVSNSIVELVPSMQDFPSGATFEVMVPRPRSDLHVNLPALKKLDAMLLSI 216
           MW R+ EWLL VS+ IVE  P+ Q FP G+  EVM  R R+DL+ NLPAL+KLD ML+  
Sbjct: 234 MWRRDKEWLLSVSDHIVEFTPAWQKFPDGSEGEVMTCRLRADLYANLPALRKLDDMLIET 293

Query: 217 LDGFCNSDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQEEKCWLPFPKVPRNGLSEDT 276
           LD F +++F YV+  ++    D +              +QEEKCWLP P VP  GLSE++
Sbjct: 294 LDSFEDTEFWYVNQGILSPKADGSSSSPGHLH------HQEEKCWLPVPHVPPTGLSENS 347

Query: 277 RKRLQQCRECTNQILKAAMAINNSVLSEMEIPNAYLESLPKVWNTPCGMKFYFCTTS 333
           RK LQQ R+ TNQI KA  AIN++ L+EME+P  YLE+LPK      G   Y   TS
Sbjct: 348 RKHLQQKRDFTNQIRKAVRAINSTTLAEMEVPEPYLEALPKNVRASLGDLIYRYITS 404


>GSVIVT01016434001 assembled CDS
          Length = 814

 Score =  278 bits (710), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 140/237 (59%), Positives = 170/237 (71%), Gaps = 6/237 (2%)

Query: 97  LSEVEMMKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSASVFGEQWKLEPLAQPKKS 156
           +SE+EMMKERF+KLLLGEDMSG G GVCTALAISNAITNL A++FG+ W+LEPL   KKS
Sbjct: 98  VSEIEMMKERFSKLLLGEDMSGSGKGVCTALAISNAITNLCATIFGQLWRLEPLPPEKKS 157

Query: 157 MWHREMEWLLCVSNSIVELVPSMQDFPSGATFEVMVPRPRSDLHVNLPALKKLDAMLLSI 216
           MW REME LLCVS+ IV+L+PS Q FP G+  EVM  RPRSD+ +NLPAL+KLD MLL I
Sbjct: 158 MWRREMELLLCVSDHIVQLIPSWQTFPDGSKLEVMTCRPRSDIFINLPALRKLDNMLLEI 217

Query: 217 LDGFCNSDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQEEKCWLPFPKVPRNGLSEDT 276
           LDGF N++F YVD  ++    D +               QEEK WLP P+VP  GLSE++
Sbjct: 218 LDGFTNTEFWYVDQGIIAPETDGSASFRKPIQ------RQEEKWWLPVPRVPPGGLSENS 271

Query: 277 RKRLQQCRECTNQILKAAMAINNSVLSEMEIPNAYLESLPKVWNTPCGMKFYFCTTS 333
           RK+L   RE  NQILKAAMAIN++ L+EME+P ++LE+LPK      G   Y   TS
Sbjct: 272 RKQLNHKRESANQILKAAMAINSNALAEMEVPESFLEALPKNGRACLGDIIYRYITS 328


>GSVIVT01026930001 assembled CDS
          Length = 495

 Score =  245 bits (625), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 126/239 (52%), Positives = 161/239 (67%), Gaps = 12/239 (5%)

Query: 98  SEVEMMKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSASVFGEQWKLEPLAQPKKSM 157
           +E+E+MKERF+KLLLGEDMSG G GVCTA+ ISNAITNL A++FG+  KLEPL+  KKSM
Sbjct: 113 AELELMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATIFGQNQKLEPLSPEKKSM 172

Query: 158 WHREMEWLLCVSNSIVELVPSMQDFPSGATFEVMVPRPRSDLHVNLPALKKLDAMLLSIL 217
           W REM  LL V + +VE  PS+Q  P+G + EVM  RPRSD+H+NLPAL+KLD ML  IL
Sbjct: 173 WKREMNCLLAVCDYMVEFFPSLQTLPNGTSVEVMASRPRSDIHINLPALQKLDTMLQEIL 232

Query: 218 DGFCNSDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQ--EEKCWLPFPKVPRNGLSED 275
           D F  ++F Y +   +V+                  I Q  +EK WLP P +PR GLSE 
Sbjct: 233 DSFKETEFWYAEQGKLVSA---------TRAGSFRLITQRPDEKWWLPVPCIPRGGLSEK 283

Query: 276 TRKRLQQCRECTNQILKAAMAINNSVLSEMEIPNAYLESLPKVWNTPCGMKFY-FCTTS 333
            RK L+  R+C NQI KAAM+IN+S+L+EM+IP++Y+ +LPK      G   Y F  TS
Sbjct: 284 ARKDLKHTRDCANQIHKAAMSINSSLLAEMKIPDSYIAALPKSGRAGLGDAIYRFMNTS 342


>GSVIVT01015369001 assembled CDS
          Length = 536

 Score =  243 bits (621), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 130/249 (52%), Positives = 165/249 (66%), Gaps = 19/249 (7%)

Query: 86  PTKGAVKPDTGLS-EVEMMKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSASVFGEQ 144
           P+  +++P    S EVE ++ERFAKLLLGEDMSGRG GV +ALA+SNAITNL+ASVFGEQ
Sbjct: 90  PSHSSLRPGASHSQEVEQIRERFAKLLLGEDMSGRGTGVSSALALSNAITNLAASVFGEQ 149

Query: 145 WKLEPLAQPKKSMWHREMEWLLCVSNSIVELVPSMQDFPSGATFEVMVPRPRSDLHVNLP 204
           WKLEP++  +K+MW ++++ LL V++ IVELVPS Q    G T EVMV R R DL +N+P
Sbjct: 150 WKLEPMSAERKAMWRKDIDLLLSVADYIVELVPSQQTAKDGTTMEVMVSRQRKDLLMNIP 209

Query: 205 ALKKLDAMLLSILDGFCN-SDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQEEKCWLP 263
           AL+KLDAML+  LD F   ++F YV      A   E                 ++K WLP
Sbjct: 210 ALRKLDAMLIEHLDNFKGPNEFWYVSRDAEDAGSRE-----------------DDKWWLP 252

Query: 264 FPKVPRNGLSEDTRKRLQQCRECTNQILKAAMAINNSVLSEMEIPNAYLESLPKVWNTPC 323
            PKVP NGLS+ +RK LQ  +E  NQ+LKAAMAIN  +LSEME+P+ Y+ESLPK      
Sbjct: 253 RPKVPPNGLSDASRKWLQFQKESVNQVLKAAMAINAQLLSEMEVPDDYIESLPKNGRASL 312

Query: 324 GMKFYFCTT 332
           G   Y   T
Sbjct: 313 GDSIYKSIT 321


>GSVIVT01017070001 assembled CDS
          Length = 434

 Score =  216 bits (551), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 119/230 (51%), Positives = 146/230 (63%), Gaps = 13/230 (5%)

Query: 103 MKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSASVFGEQWKLEPLAQPKKSMWHREM 162
           MKERF+KLLLGEDMSG G GV +ALA+SNAITN++ASVFGE  +LEP+   +K+MW RE+
Sbjct: 1   MKERFSKLLLGEDMSGHGKGVSSALALSNAITNVAASVFGELRRLEPMPVERKTMWRREI 60

Query: 163 EWLLCVSNSIVELVPSMQDFPSGATFEVMVPRPRSDLHVNLPALKKLDAMLLSILDGFCN 222
           +WLL VS+ IVE+VP  Q    G + EVMV R R DL +N+PAL+KLDAML+  L+ F +
Sbjct: 61  DWLLSVSDHIVEMVPQ-QRSKDGTSMEVMVTRQRCDLLMNIPALRKLDAMLIDTLENFKD 119

Query: 223 SDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQEEKCWLPFPKVPRNGLSEDTRKRLQQ 282
               Y  S      GD                   +K W+P  KVP NGLSE TRK LQ 
Sbjct: 120 QKEFYYPS------GDAKDSSREDSQRTS------DKWWIPNAKVPPNGLSEVTRKWLQF 167

Query: 283 CRECTNQILKAAMAINNSVLSEMEIPNAYLESLPKVWNTPCGMKFYFCTT 332
            ++  NQ+LKAAMAIN  +LSEMEIP  Y+ESLPK      G   Y   T
Sbjct: 168 QKDSVNQVLKAAMAINAQILSEMEIPENYIESLPKNGRASLGDSIYKSIT 217


>GSVIVT01036908001 assembled CDS
          Length = 912

 Score =  209 bits (533), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/237 (44%), Positives = 150/237 (63%), Gaps = 13/237 (5%)

Query: 97  LSEVEMMKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSASVFGEQWKLEPLAQPKKS 156
            S+VE+MKERF+KLLLGED++G   G+ +ALA+SNAITNL+ SVFGE WKLEPL++ +K 
Sbjct: 117 FSDVEVMKERFSKLLLGEDITGGKKGLTSALALSNAITNLAVSVFGELWKLEPLSEERKV 176

Query: 157 MWHREMEWLLCVSNSIVELVPSMQDFPSGATFEVMVPRPRSDLHVNLPALKKLDAMLLSI 216
            W REM+WLL  +N +VELVP+ Q   +G T E+M P+ R+D+H+NLPAL+KLD+ML+  
Sbjct: 177 KWQREMDWLLSPTNYMVELVPAKQSGANGRTLEIMTPKARADIHMNLPALQKLDSMLIET 236

Query: 217 LDGFCNSDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQEEKCWLPFPKVPRNGLSEDT 276
           LD   +++F Y +                        ++Q ++ WLP P+VP  GLS+  
Sbjct: 237 LDSMVDTEFWYAEG-------------GSRAEGRTRSMSQSKRWWLPSPQVPTTGLSDPE 283

Query: 277 RKRLQQCRECTNQILKAAMAINNSVLSEMEIPNAYLESLPKVWNTPCGMKFYFCTTS 333
           RK+L    +  +Q+ KAA AIN +VL EM +P    ++L K      G + Y   T+
Sbjct: 284 RKKLLHQAKVVHQVFKAARAINENVLLEMPVPTLIRDALAKSGKANLGEELYRVLTA 340