Jatropha Genome Database

JcCA0129501.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0129501.30 - phase: 1 /pseudo/partial
         (293 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008039001 assembled CDS                                       380   e-106
GSVIVT01011370001 assembled CDS                                       354   3e-98
GSVIVT01011365001 assembled CDS                                       345   2e-95
GSVIVT01008450001 assembled CDS                                       284   3e-77

>GSVIVT01008039001 assembled CDS
          Length = 354

 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/262 (68%), Positives = 213/262 (81%), Gaps = 1/262 (0%)

Query: 4   DIVLGFESIEEYKNDTTYFGSIVGRVANRIGKSQFTLNGTVYKLVPNNGKNSLHGGPKGF 63
           D+VLGF+S+E+YKNDTTYFG+IVGRVANRI  +QFTLNG  YKLVPN GKN LHGGPKGF
Sbjct: 62  DVVLGFDSVEDYKNDTTYFGAIVGRVANRIKGAQFTLNGKKYKLVPNEGKNMLHGGPKGF 121

Query: 64  SEVLWKVYSYNKDSHITFTYDSFDGEEGYPGDLSVSVTYFVIGTNKIAVKMVAKPLNKAT 123
           S+V+W V SY+K+SH+TF Y SFDGEEG+PGDL VSVTY    TNK+ +KM  +PLNKAT
Sbjct: 122 SDVIWHVQSYDKNSHVTFVYHSFDGEEGFPGDLHVSVTYMFFQTNKLVIKMTGRPLNKAT 181

Query: 124 PVNLALHTYFNLAGHNSGDILSHKIQLFAPEITPVDSELIPTGKITPVKGTPFDFLEPRE 183
           PVNLA H+Y+NL GH+SGD+ SH++QLFA +ITPVD ELIPTGKI PV+GTP+DFL   E
Sbjct: 182 PVNLASHSYWNLGGHSSGDVFSHQVQLFADKITPVDDELIPTGKILPVEGTPYDFLNIHE 241

Query: 184 IGSRIKEVP-GYDINYVLEDLKSGHLKRAAIVKEDVSGRKLELWTNQPGVQFYTSNMLHD 242
           I +R  E+P GYDINYVL  + + H  +AA+V E  SGRK+ELWTNQPG+QFYTSNML  
Sbjct: 242 IKTRFHELPSGYDINYVLNYVGNEHFHKAAVVYESKSGRKMELWTNQPGLQFYTSNMLGT 301

Query: 243 VKGKDGFIYQKFAGFCLETQGF 264
           VKGK G  Y  + G CLETQGF
Sbjct: 302 VKGKGGVTYNNYDGICLETQGF 323


>GSVIVT01011370001 assembled CDS
          Length = 1699

 Score =  354 bits (908), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 173/266 (65%), Positives = 205/266 (77%), Gaps = 4/266 (1%)

Query: 3   ADIVLGFESIEEYKNDTTYFGSIVGRVANRIGKSQFTLNGTVYKLVPNNGKNSLHGGPKG 62
           AD+VLG++S +EYKNDTT FG+IVGRVANRIG +QFTLNGT YKLV N+GKN LHGGPKG
Sbjct: 62  ADVVLGYDSTKEYKNDTTNFGAIVGRVANRIGGAQFTLNGTHYKLVANDGKNMLHGGPKG 121

Query: 63  FSEVLWKVYSYNKDSH---ITFTYDSFDGEEGYPGDLSVSVTYFVIGTNKIAVKMVAKPL 119
           F +V W+V  Y K  H   I F+Y S DGEEG+PGDL  +VTY ++G  ++ V M AK L
Sbjct: 122 FGKVAWRVSKYEKGGHSPYIMFSYHSLDGEEGFPGDLIATVTYMLVGDYQLIVTMKAKAL 181

Query: 120 NKATPVNLALHTYFNLAGHNSGDILSHKIQLFAPEITPVDSELIPTGKITPVKGTPFDFL 179
           NKATPVNLA H Y+NL GH SGDILS++IQ+F   ITPVD ELIPTGKI PVKGTP+DFL
Sbjct: 182 NKATPVNLAQHAYWNLGGHTSGDILSNEIQIFGSHITPVDKELIPTGKIVPVKGTPYDFL 241

Query: 180 EPREIGSRIKEVP-GYDINYVLEDLKSGHLKRAAIVKEDVSGRKLELWTNQPGVQFYTSN 238
           +P  IGS+I ++P G+DINYVL+D     +  AA+V    SGR LEL+TN PG+QFYTSN
Sbjct: 242 KPCTIGSKINKLPSGFDINYVLDDTAPNKVGLAAMVHHKKSGRMLELYTNAPGLQFYTSN 301

Query: 239 MLHDVKGKDGFIYQKFAGFCLETQGF 264
            L DVKGK GF+YQ  A  CLETQGF
Sbjct: 302 SLKDVKGKGGFVYQAHAALCLETQGF 327


>GSVIVT01011365001 assembled CDS
          Length = 359

 Score =  345 bits (885), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/266 (63%), Positives = 203/266 (76%), Gaps = 4/266 (1%)

Query: 3   ADIVLGFESIEEYKNDTTYFGSIVGRVANRIGKSQFTLNGTVYKLVPNNGKNSLHGGPKG 62
           AD+VLG++S +EYKNDTT FG+IVGRVANRIG +QFTLNGT YKLV N GKN LHGGPKG
Sbjct: 62  ADVVLGYDSAKEYKNDTTNFGAIVGRVANRIGGAQFTLNGTHYKLVANEGKNMLHGGPKG 121

Query: 63  FSEVLWKVYSYNKDSH---ITFTYDSFDGEEGYPGDLSVSVTYFVIGTNKIAVKMVAKPL 119
           F +V W+V  Y K  H   I F+Y S DGEEG+PGDL  +VTY ++G  ++ V M AK L
Sbjct: 122 FGKVAWRVSKYKKGGHSPYIMFSYHSLDGEEGFPGDLIATVTYMLVGDYQLIVTMKAKAL 181

Query: 120 NKATPVNLALHTYFNLAGHNSGDILSHKIQLFAPEITPVDSELIPTGKITPVKGTPFDFL 179
           NKATPVNLA H Y+NL GH SGDILS++IQ+F   ITPVD ELIPTGKI PVKGTP+DFL
Sbjct: 182 NKATPVNLAQHAYWNLGGHTSGDILSNEIQIFGSHITPVDKELIPTGKIVPVKGTPYDFL 241

Query: 180 EPREIGSRIKEVP-GYDINYVLEDLKSGHLKRAAIVKEDVSGRKLELWTNQPGVQFYTSN 238
           +P  IGS+I ++P G++INYVL+D     +  AA+V    SGR LEL+TN PG+QFYTSN
Sbjct: 242 KPCTIGSKINKLPSGFNINYVLDDTAPNKVGLAAMVHHKKSGRMLELYTNAPGLQFYTSN 301

Query: 239 MLHDVKGKDGFIYQKFAGFCLETQGF 264
            L D KGK GF+YQ  A  CLET+GF
Sbjct: 302 FLKDEKGKGGFVYQAHAALCLETEGF 327


>GSVIVT01008450001 assembled CDS
          Length = 322

 Score =  284 bits (727), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 151/270 (55%), Positives = 186/270 (68%), Gaps = 7/270 (2%)

Query: 1   NYADIVLGFESIEEY-KNDTTYFGSIVGRVANRIGKSQFTLNGTVYKLVPNNGKNSLHGG 59
           N AD+VLG +S+E Y K D  YFG IVGRVANRI   +FTLNG  Y+L  N   NSLHGG
Sbjct: 23  NLADVVLGCDSLEPYLKGDVPYFGCIVGRVANRIKDGKFTLNGIEYQLPINKPPNSLHGG 82

Query: 60  PKGFSEVLWKVYSYN--KDSHITFTYDSFDGEEGYPGDLSVSVTYFVIGTNKIAVKMVAK 117
            KGFS+ +W+V      K   ITF Y S DGEEGYPGD+SV+ TY +  +  + + M A 
Sbjct: 83  HKGFSKKVWEVAERKEGKTPSITFKYHSHDGEEGYPGDVSVTATYTLTSSTTMRLDMEAV 142

Query: 118 PLNKATPVNLALHTYFNLAGHNSGDILSHKIQLFAPEITPVDSELIPTGKITPVKGTPFD 177
           P NK TP+NLA HTY+NLAGH+SG+IL H IQ++   ITPVD   +PTG+ITPVK TPFD
Sbjct: 143 PENKPTPINLAQHTYWNLAGHSSGNILDHSIQIWGSHITPVDQNTVPTGEITPVKATPFD 202

Query: 178 FLEPREIGSRIKEVP-GYDINYVLE--DLKSGHLKRAAIVKEDVSGRKLELWTNQPGVQF 234
           F   ++IG+ I EV  GYD NY L+  + K G LK AA VK+  S R L LWT  PG+QF
Sbjct: 203 FTTEKKIGTSIHEVGLGYDHNYALDCGEEKEG-LKHAAKVKDPSSSRVLNLWTTAPGMQF 261

Query: 235 YTSNMLHDVKGKDGFIYQKFAGFCLETQGF 264
           YT+N ++ V GKDG +Y K +G CLETQG+
Sbjct: 262 YTANYVNGVAGKDGAVYGKHSGLCLETQGY 291