Jatropha Genome Database

JcCA0128511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0128511.20 - phase: 0 /partial
         (232 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011807001 assembled CDS                                       353   3e-98
GSVIVT01015448001 assembled CDS                                       192   1e-49
GSVIVT01008575001 assembled CDS                                       172   1e-43
GSVIVT01004951001 assembled CDS                                       165   2e-41
GSVIVT01006518001 assembled CDS                                       103   1e-22
GSVIVT01008574001 assembled CDS                                        96   1e-20

>GSVIVT01011807001 assembled CDS
          Length = 1078

 Score =  353 bits (907), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 166/224 (74%), Positives = 190/224 (84%), Gaps = 1/224 (0%)

Query: 1    GEVVEIDTWVGASGKNGMRRDWLVRSQATGQVFARATSTWVMMNEKTRRLSKMPEEVRAE 60
            GEVVEIDTWVGASGKNGMRRDWL+RS ATGQ+FARATSTWVMMN++TRRLSKMPEEVRAE
Sbjct: 848  GEVVEIDTWVGASGKNGMRRDWLIRSHATGQIFARATSTWVMMNQQTRRLSKMPEEVRAE 907

Query: 61   IAPWFIEKQAIKEEVPEKIAKLDDKARYVVTNLKPKRSDLDMNQHVNNVKYVRWMLETLP 120
            I+PWFIEKQAIKE+VPEKI KLDDKA+YV +NLKPKRSDLDMN HVNNVKYVRWMLET+P
Sbjct: 908  ISPWFIEKQAIKEDVPEKIVKLDDKAKYVNSNLKPKRSDLDMNHHVNNVKYVRWMLETIP 967

Query: 121  DQFFENHQLSGITLEYKRECGSSDIVESLCEPDEEEGIINTGLKQNNDKSLFNGFSLPSE 180
            DQF E+HQLS I LEY+RECGSSDIV+SLCEPDE   +   G +Q N+  L NGF + SE
Sbjct: 968  DQFLESHQLSSIILEYRRECGSSDIVQSLCEPDEAAILKEGGQQQPNEIKLLNGFPMASE 1027

Query: 181  IMEGNGFLS-SLEKTPLKYTHLLVAKGKTQSEEIVRGKTIWKKK 223
            I++G+G L+ S  K  L YTH+L  KG  + EEIVRG+T W+ K
Sbjct: 1028 ILDGHGLLNGSFHKGTLGYTHVLQTKGGRKYEEIVRGRTKWRTK 1071


>GSVIVT01015448001 assembled CDS
          Length = 408

 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/229 (43%), Positives = 140/229 (61%), Gaps = 34/229 (14%)

Query: 1   GEVVEIDTWVGASGKNGMRRDWLVRSQATGQVFARATSTWVMMNEKTRRLSKMPEEVRAE 60
           G+VV++DTWV ASGKNGMRRDW++R   TG+   RA+S WVMMN++TRRLSK+P+ VRAE
Sbjct: 202 GDVVQVDTWVCASGKNGMRRDWIIRDCKTGETLTRASSVWVMMNKQTRRLSKIPDAVRAE 261

Query: 61  IAPWFIEKQAIKEEVPEKIAKLDDK-ARYVVTNLKPKRSDLDMNQHVNNVKYVRWMLETL 119
           I P+F++   I +E   K+ KLDD  A Y+ T L P+ SDLD+NQHVNNVKY+ W+LE+ 
Sbjct: 262 IEPYFMDSAPIVDEDGRKLPKLDDSTADYIRTGLTPRWSDLDVNQHVNNVKYIGWILESA 321

Query: 120 PDQFFENHQLSGITLEYKRECGSSDIVESLCEPDEEEGIINTGLKQNNDKSLFNGFSLPS 179
           P    E+H+LS +TLEY+RECG   +++SL                              
Sbjct: 322 PLPILESHELSSMTLEYRRECGRDSVLQSLTA---------------------------- 353

Query: 180 EIMEGNGFLSSLEKTPLKYTHLLVAKGKTQSEEIVRGKTIWKKKLLTTM 228
             + G G  + L+   ++  HLL  +   +  EIV+G+T W+ K   +M
Sbjct: 354 --VCGTGVGNLLDCGNVECQHLLRLE---EGAEIVKGRTEWRPKYAHSM 397


>GSVIVT01008575001 assembled CDS
          Length = 374

 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/153 (52%), Positives = 112/153 (73%), Gaps = 4/153 (2%)

Query: 1   GEVVEIDTWVGASGKNGMRRDWLVRSQATGQVFARATSTWVMMNEKTRRLSKMPEEVRAE 60
           G+VVEIDTWV A+GKNGMRRDW++R   T ++  RATSTWV+MN +TRRL K+PE+VR E
Sbjct: 176 GDVVEIDTWVDAAGKNGMRRDWIIRDCNTQKIITRATSTWVIMNRETRRLCKIPEQVREE 235

Query: 61  IAPWFIEKQAIKEEVP---EKIAKL-DDKARYVVTNLKPKRSDLDMNQHVNNVKYVRWML 116
           + P+++ + AI        EKI KL D+ A  + + L P+ SD+D N HVNNVKY+ W+L
Sbjct: 236 VQPFYLNRLAIAAAAQNHNEKIDKLTDETAGRIRSGLAPRWSDMDANLHVNNVKYIGWIL 295

Query: 117 ETLPDQFFENHQLSGITLEYKRECGSSDIVESL 149
           E++P    E++ L+ +TLEY+REC  SD++ESL
Sbjct: 296 ESVPVDVLEHYNLTSMTLEYRRECRQSDLLESL 328


>GSVIVT01004951001 assembled CDS
          Length = 297

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/231 (39%), Positives = 136/231 (58%), Gaps = 30/231 (12%)

Query: 2   EVVEIDTWVGASGKNGMRRDWLVRSQATGQVFARATSTWVMMNEKTRRLSKMPEEVRAEI 61
           +V+EI+TW    G+ G RRDW+++  ATGQV  RATS WVMMN+ TRRL K+ ++VR E 
Sbjct: 85  DVIEIETWCQGEGRIGTRRDWILKDYATGQVIGRATSKWVMMNQDTRRLQKVSDDVRDEF 144

Query: 62  APWFIEKQAIKEEVP-------EKIAKLDDKARYVVTNLKPKRSDLDMNQHVNNVKYVRW 114
             +    + ++   P       +KIAKL+D ++Y    L P+R+DLDMNQHVNNV Y+ W
Sbjct: 145 LIYC--PRELRLAFPDENNSSLQKIAKLEDPSQYSRLGLVPRRADLDMNQHVNNVTYIGW 202

Query: 115 MLETLPDQFFENHQLSGITLEYKRECGSSDIVESLCEPDEEEGIINTGLKQNNDKSLFNG 174
           +LE++P +  + H+L  ITL+Y+REC   DIV+SL   +  E                + 
Sbjct: 203 VLESMPQEIIDTHELQTITLDYRRECQHDDIVDSLTSSESTE----------------DA 246

Query: 175 FSLPSEIMEGNGFLSSL--EKTPLKYTHLLVAKGKTQSEEIVRGKTIWKKK 223
            ++P E+   NG  ++   ++   ++ HLL   G  +  EI RG+T W+KK
Sbjct: 247 KTIP-ELRGTNGSATATKGQQDCCQFLHLLRLSG--EGLEINRGRTEWRKK 294


>GSVIVT01006518001 assembled CDS
          Length = 144

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 87/149 (58%), Gaps = 21/149 (14%)

Query: 77  EKIAKLDDKARYVVTNLKPKRSDLDMNQHVNNVKYVRWMLETLPDQFFENHQLSGITLEY 136
           +KIAKL+D ++Y    L P+R+DLDMNQHVNNV Y+ W+LE++P +  + H+L  ITL+Y
Sbjct: 12  QKIAKLEDPSQYSRLGLVPRRADLDMNQHVNNVTYIGWVLESMPQEIIDTHELQTITLDY 71

Query: 137 KRECGSSDIVESLCEPDEEEGIINTGLKQNNDKSLFNGFSLPSEIMEGNGFLSSL--EKT 194
           +REC   DIV+SL   +  E                +  ++P E+   NG  ++   ++ 
Sbjct: 72  RRECQHDDIVDSLTSSESTE----------------DAKTIP-ELRGTNGSATATKGQQD 114

Query: 195 PLKYTHLLVAKGKTQSEEIVRGKTIWKKK 223
             ++ HLL   G  +  EI RG+T W+KK
Sbjct: 115 CCQFLHLLRLSG--EGLEINRGRTEWRKK 141


>GSVIVT01008574001 assembled CDS
          Length = 175

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query: 2   EVVEIDTWVGASGKNGMRRDWLVRSQATGQVFARATSTWVMMNEKTRRLSKMPEEVRAEI 61
           +VVEIDTW+ A+GKNG+RRDW++R   T ++  RAT TWV+MN +TRRL K+PE+VR EI
Sbjct: 55  DVVEIDTWLDAAGKNGVRRDWIIRDCNTQKIITRATGTWVIMNSETRRLCKIPEQVREEI 114

Query: 62  APWFIEK--QAIKEEVPEKIAKLDDK 85
            P+++ +   A  +   EKI KL D+
Sbjct: 115 QPFYLNRFAMAAAQNHNEKIEKLTDE 140